Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0678 ATGGAACCTGAGAAAGCCTTAGTCTTGGAAGCAATTTCCATGGAGGAAATTGGGATCCCAATTGTCTCTGAGAAGGTTGAGATTCTTCCTATGACAAAGGGACTGTCTTGCAATTCTGTATGTGCTTTTTCCAGACAGGAACACAGTGTTTTGGCATCTAAAGAGTCATCAAAGTCAGCAAGGAAACTTTCTTTACTCATAGCTTTCTATGCTGTTGTTATGGTTGTGGAAGTTATAGGGGGTGTAAAAGCTCACAGTTTGTCTGTCATCAGTGATGCTGCTCACTTGCTTTCTGATATTGCTGGGTTCTCTGTCTCTCTCTTTGCAGTGTGGGCTTCGGGTTGGGCGGCGACGCCGCATCAATCTTTTGGGTACAATCGTCTTGAGGTTTTGGGTGCCCTTTTATCTGTGCAGTTTATTTGGATGATATCTGGTTATTTGATATATGAAGCTGTTGGTAGACTTCTTCACCAAAATGAAAGGGTGAATGGAATGCTCATGTTTGCAATTGCAGCATTTGGGTTTGTTCTTAACCTTATCATGGTTGTATGGCTTGGTCATGATCATCATCATGGCTTTGGAGGGAATGATCATTGTCATCATCATCATCATCATCATGGGTTTGGAGACTCAGATCATGGACATGATCATGATGATCATGGCCATAGTCATAGCCATAGCAATAGCAATAGCAATAGCCATAGCCATAGCCATAGTCATAGTCAGTTCTGTGGAGACTCAGATCATGATCATGGGATGGAGGAAGTGGAGCTAGCTAAATTGACTGATGAGGAGGAGAACCTGAGCATGCTTCCAGGTAGCCAGAGAAATGTTAGTGTCTTGAACTTTAATCTCCAAGGGGCCTATTTGCATGTCATGGCTGATATGATTCAATCTATTGGAGTGATGATTGGCGGAGCTGTAATATGGGCAAAACCAGAGTGGTTTATAGTTGACCTTCTATGTACTCTCTTATTCTCTGTTTTGTCCTTAAGTACTACTGTACCCATGCTTAGGAATATATATGGCATTCTGACAGAGGGTGCACCTAGTGAGATCAATGTCATTCAGGTAGAAAATGGTCTTAGAAGTATTAAGGGAGTGCTGGATGTCCATGACTTGCACATTTGGGCCATAACAGTTGGTAAAAATGTTCTGTCTTGCCATGTAGTAGCTGAGCCTGGCATCAACTCTGTTGATTTACTAGGCACCATTAAGCATTACTGTGAAAAATCATATCAAATACAACATGTAACCATTCAAATTGAGTAA 1272 0.4167 MEPEKALVLEAISMEEIGIPIVSEKVEILPMTKGLSCNSVCAFSRQEHSVLASKESSKSARKLSLLIAFYAVVMVVEVIGGVKAHSLSVISDAAHLLSDIAGFSVSLFAVWASGWAATPHQSFGYNRLEVLGALLSVQFIWMISGYLIYEAVGRLLHQNERVNGMLMFAIAAFGFVLNLIMVVWLGHDHHHGFGGNDHCHHHHHHHGFGDSDHGHDHDDHGHSHSHSNSNSNSHSHSHSHSQFCGDSDHDHGMEEVELAKLTDEEENLSMLPGSQRNVSVLNFNLQGAYLHVMADMIQSIGVMIGGAVIWAKPEWFIVDLLCTLLFSVLSLSTTVPMLRNIYGILTEGAPSEINVIQVENGLRSIKGVLDVHDLHIWAITVGKNVLSCHVVAEPGINSVDLLGTIKHYCEKSYQIQHVTIQIE* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0678 423 Gene3D Cation efflux protein transmembrane domain 59 345 IPR027469 -
Lja3g0678 423 MobiDBLite consensus disorder prediction 209 225 - -
Lja3g0678 423 SUPERFAMILY Cation efflux protein transmembrane domain-like 58 347 IPR027469 -
Lja3g0678 423 MobiDBLite consensus disorder prediction 226 240 - -
Lja3g0678 423 Pfam Cation efflux family 65 345 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lja3g0678 423 PANTHER METAL TOLERANCE PROTEIN B 1 216 - -
Lja3g0678 423 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 1 216 - -
Lja3g0678 423 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 221 423 - -
Lja3g0678 423 TIGRFAM CDF: cation diffusion facilitator family transporter 60 423 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lja3g0678 423 PANTHER METAL TOLERANCE PROTEIN B 221 423 - -
Lja3g0678 423 MobiDBLite consensus disorder prediction 198 246 - -
Lja3g0678 423 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 350 423 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0678 Lja-Chr3 6771303 6773188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0678 41 423 Inorganic Solute Cotransporters AT3G58810 44.909 1.05e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0678 K14689 - gmx:100777590 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0678 3 6771303 6773188 Lja3g0678 3 6771303 6773188 ECH