Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0667 ATGAGGAAGCCTGAGCCAAAAAACAACAACTCCAATATGACGAAGCTTAGAAAGGGGTTGTGGTCACCAGAGGAAGATGACAAGCTCATGAACTACATGTTAAACTCTGGACAAGGTTGTTGGAGCGATGTGGCCAGAAATGCTGGTTTGCAGAGATGTGGGAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCTTTTTCGCCTCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATTGCGGCACGCTTACCTGGGAGAACTGACAATGAGATTAAGAACTTTTGGAATTCCACAATAAAAAAAAGACTCAAGAACTTGCCTTCACCAAACGCAAGTGAGTCCTCATGTGAGCCTAACAAGAAAGACCATAACAACAATGGAGGTTTCAGTTTCAATTCCACACAGCAAGATGTTGATTTTATTATGCCTATGTTCATGACTTCATCTCCATCACCAACAACAACACAAGCCACGGTTCTCAACACCATAATTGAGAGGTTGCCTATGCTAGAGCATGGAATTATGAACATGCCAGCTTCCGGTGCCGGTGGATTCTTCAACGCGCCACCACGCTTCTTACAAAGTGAAATTGACAACGACCACAACAACATCAAAGGTTTTTATTTGGAAAACGGAGTCTTTGAAGGGGTTCCTCCTCTGGAGAGTGTAATTAGGACTACTACTACTTCTGACCATGACCTAAAAGTGGAGAATAAGGGAGATACTAACTATAGTTGTTACTTTGATGACATAAACAACATCGTTAACAATTGCTACATTAGCAACAATAATAAGAGACCTCATGAAAATAGAGGTGGGGTGCAGGAGGATTTGTGCCCAGAAGAGTTAACCATGGGTGAGTGGGACTTGGAGGATTTGATGAAAGATGTTGCGTCCTTTCCCTTTCTTGATTTTTCAAGCTGA 975 0.4246 MRKPEPKNNNSNMTKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLPSPNASESSCEPNKKDHNNNGGFSFNSTQQDVDFIMPMFMTSSPSPTTTQATVLNTIIERLPMLEHGIMNMPASGAGGFFNAPPRFLQSEIDNDHNNIKGFYLENGVFEGVPPLESVIRTTTTSDHDLKVENKGDTNYSCYFDDINNIVNNCYISNNNKRPHENRGGVQEDLCPEELTMGEWDLEDLMKDVASFPFLDFSS* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0667 324 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Lja3g0667 324 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Lja3g0667 324 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Lja3g0667 324 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g0667 324 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Lja3g0667 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Lja3g0667 324 CDD SANT 21 65 IPR001005 -
Lja3g0667 324 PANTHER MYB DOMAIN PROTEIN 55 8 324 - -
Lja3g0667 324 MobiDBLite consensus disorder prediction 122 145 - -
Lja3g0667 324 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Lja3g0667 324 Gene3D - 72 144 - -
Lja3g0667 324 SMART sant 70 118 IPR001005 -
Lja3g0667 324 SMART sant 17 67 IPR001005 -
Lja3g0667 324 Gene3D - 15 71 - -
Lja3g0667 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Lja3g0667 324 PANTHER MYB TRANSCRIPTION FACTOR 8 324 - -
Lja3g0667 324 CDD SANT 73 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0667 Lja-Chr3 6647630 6650560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0667 1 123 MYB Transcription Factor Family AT5G12870 81.600 1.58e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g0667 Myb_DNA-binding 9.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0667 K09422 - gmx:100785810 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0667 3 6647630 6650560 Lja3g0667 3 6647630 6650560 ECH
Lja3g2735 3 40293235 40294598 Lja3g0667 3 6647630 6650560 PCT