Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0656 ATGGGAACTCCGAGCGGTGAAGTACGAACCCTTTGGGTCGGAGATTTACAGTACTGGGTCGACGAAAACTACCTCTCTCAGTGCTTCGCACACACCGGCGATGTTCTCTCCGTCAAGATCATCCGCAACAAGATCACCGGCCAACCGGAGGGCTACGGCTTCGTCGAGTTCGTCTCCCACGCCGCCGCCGAACGCGTTCTCCACACCTACAACGGAACCCTCATGCCCGGAACCGAACAACCCTTCAGACTCAACTGGGCTTCTTCCGGCGGCGGCGGCGACGCCGGCCCTGACCACTCCATCTTCGTCGGCGATCTTGCCCCTGACGTCACTGATTTCCTCCTCCAGGAAACTTTTCGGACTCATTACCCTTCTGTTAGAGGCGCCAAGGTCGTCACCGACCCCGTCACCGGAAGGTCCAAGGGTTACGGGTTTGTCAAATTCTCCGACGAGGCGCAGAGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCTCTCGTCCAATGCGTATCAGCGCTGCAACGCCGAAGAAAACCCCTTCTTTTCAACAGCAATATGCTCCAACCAAAGCAATGTATCAATATCCGGCATACACTGCCCCAGTTGCCCCAGTGAGTGTAGTTGCACCAGAGAATGATGTGAATAATACTACTGTTTGTGTTGGTAATTTGGATCTTAATGTAACGGAGGAGGAGCTTAAGCAAACGTTTGTGCAGTGTGGGGATGTTGCGTCTGTCAAAGTTCATGCTGGCAAAGGATATGGTTTTGTTCAATTTGGGACTAGAGCATCTGCTGAGGATGCTATTCAGAGGATGCAGGGGAAGATGATAGGTCAGCAAGTGGTCCAGATCTCTTGGGGTAGTAGCTTAACTGCTAGACAGGATGTACCTGGTGGCTGGGGGCAGCCTGTGGATCCAAATCAATGGAATGCCTACTATGCATATGGACAAGGTTATGAAGCATATGCTTATGGAGCTACTCAAGATCCTTCCTCATATGCATATGGTGCATATGCTGGTTTTGCACAATATCCTCAACAGGTTGAAGGTGCTCAAGACATGTCAGCTGTGTCTATGCCTACAGAGGAGCTGTATGATCCCATGGCAATGCCTGATGTCGATAAGTTAAATACTGCATATGTTTCAATACATGGAAGCGCCATTTTAGGACGGTCCCTCTGGCAGAAAACCTCGCCGTTTTTGCAGCAAGCTTAG 1221 0.5111 MGTPSGEVRTLWVGDLQYWVDENYLSQCFAHTGDVLSVKIIRNKITGQPEGYGFVEFVSHAAAERVLHTYNGTLMPGTEQPFRLNWASSGGGGDAGPDHSIFVGDLAPDVTDFLLQETFRTHYPSVRGAKVVTDPVTGRSKGYGFVKFSDEAQRNRAMTEMNGVYCSSRPMRISAATPKKTPSFQQQYAPTKAMYQYPAYTAPVAPVSVVAPENDVNNTTVCVGNLDLNVTEEELKQTFVQCGDVASVKVHAGKGYGFVQFGTRASAEDAIQRMQGKMIGQQVVQISWGSSLTARQDVPGGWGQPVDPNQWNAYYAYGQGYEAYAYGATQDPSSYAYGAYAGFAQYPQQVEGAQDMSAVSMPTEELYDPMAMPDVDKLNTAYVSIHGSAILGRSLWQKTSPFLQQA* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0656 406 SUPERFAMILY RNA-binding domain, RBD 200 317 IPR035979 GO:0003676
Lja3g0656 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 178 IPR000504 GO:0003723
Lja3g0656 406 SUPERFAMILY RNA-binding domain, RBD 6 90 IPR035979 GO:0003676
Lja3g0656 406 CDD RRM2_SECp43_like 99 177 - -
Lja3g0656 406 SUPERFAMILY RNA-binding domain, RBD 97 188 IPR035979 GO:0003676
Lja3g0656 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 89 IPR000504 GO:0003723
Lja3g0656 406 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 4 349 - -
Lja3g0656 406 Gene3D - 207 296 IPR012677 -
Lja3g0656 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 291 IPR000504 GO:0003723
Lja3g0656 406 CDD RRM1_SECp43_like 10 86 - -
Lja3g0656 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lja3g0656 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 284 IPR000504 GO:0003723
Lja3g0656 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 170 IPR000504 GO:0003723
Lja3g0656 406 Gene3D - 98 175 IPR012677 -
Lja3g0656 406 Gene3D - 8 88 IPR012677 -
Lja3g0656 406 SMART rrm1_1 10 85 IPR000504 GO:0003723
Lja3g0656 406 SMART rrm1_1 100 174 IPR000504 GO:0003723
Lja3g0656 406 SMART rrm1_1 220 287 IPR000504 GO:0003723
Lja3g0656 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0656 Lja-Chr3 6535996 6539551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0656 10 297 Eukaryotic Initiation Factors Gene Family AT1G71770 25.256 1.74e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0656 - - gmx:100794427 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0656 3 6535996 6539551 Lja3g0656 3 6535996 6539551 ECH
Lja3g2726 3 40165168 40169714 Lja3g0656 3 6535996 6539551 PCT