Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0649 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAACATCAGCTATCCTTATAGTACTGCGGGAAGCTTTATTGAATATTTTGAAGGCCTCACCTACGAACATGTCAACTTCATTTTTTCTGGTGCATCACACGCTCAGGAGAGTTCATGCCCTTTAAATTCAGGCTTTTACAAGTTTGGACTGCCTGAACCTGAGAACACTCCATACTATCGTTATGGTCATGATTATGAGGCAAATCATCACGAACCACTGGTGGATGAGTATAGGAGGCCTTCAGAAAACTCATTGACAAGCAATGAACAGACAGCGGCAGGAAGCACAGAATGGGGAGAAGGTGGCAACCCTGACACGCAGGACACTTCTATTGAGTGCCCACGAAGACATCACAGCAATTCCAGTGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGGCTGTTGGAACTCAAAGTCGTGGTCTCACCCCAGAACAGATCTCCTTGCTTCCAGTTTCCAAGTACAAGTGTGGGTTCTTCTTGAGGAAGAAGTCACGAGATGAGAGATGTGTGATTTGCCAGATGGAATATAAGAGAGGGGACAAGCGGATCACTTTGCCATGTAAACATGTCTATCATGCTAGTTGTGGGAACAGATGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACAGAAGTGTTTGCCGACAAGTCAAAACCCAAATAA 747 0.4431 MSWNPHMEVHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHAQESSCPLNSGFYKFGLPEPENTPYYRYGHDYEANHHEPLVDEYRRPSENSLTSNEQTAAGSTEWGEGGNPDTQDTSIECPRRHHSNSSDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTPEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKACPICYTEVFADKSKPK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0649 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Lja3g0649 248 Pfam Ring finger domain 195 236 IPR001841 -
Lja3g0649 248 SUPERFAMILY RING/U-box 192 243 - -
Lja3g0649 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 - -
Lja3g0649 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Lja3g0649 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lja3g0649 248 MobiDBLite consensus disorder prediction 92 121 - -
Lja3g0649 248 SMART ring_2 196 236 IPR001841 -
Lja3g0649 248 MobiDBLite consensus disorder prediction 90 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0649 Lja-Chr3 6469154 6474037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0649 5 245 C3H Transcription Factor Family AT3G63530 41.296 3.59e-60 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0649 K19045 - gmx:100805963 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0649 3 6469154 6474037 Lja3g0649 3 6469154 6474037 ECH