Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0647 ATGGCTTCGTCTGCGTGTTCATCGCCTCGCAATGGAAGTGAGAAATCAGTGAATAGTGTTAAGAAAGTGGGGCAGGAGAGTGAGGGATTGATTGTTCCGCCGAAGGACGAGAGCTATTTGCAATCTATGGAGGTAAAAGTTGTTGTCTTTGATAAGACCAGGACACTAACAATTGGGAAGCCAGTGGTCGTTAGTGCAGTTTTGTTTTCCAAAATTTCTATGGAGGAGTTATGTGACATGACCATTGCTGTGGAGGCAAGTAGTAAACATCCTATAGCTAAAGCTGTTGTGGCACATGCTAAGAAGCTGCGCAGGAAATTCGGATCCTGCACTGAGAAACTCCTAGACGTGAAGGATTTTGAGGTACACATGGGGGCAGGGGTGAGTGGAAAAGCTAATGAGAAAACAGTTTTAGATGGAAACAAGAGACTTTGTTATGTTTTCAACCCTTCCCCCTTTGAGATGAAAGGAATGAGTGTGCCAATGGTGGGGGATGGAATAAATGATTCCCCAGCCTCAGCTGCTGCTGATGTTGGCAAGGCTATTGGTGCTGGAACTGACATAGCAATAGAAGCAGCTTGGAAGATGTGA 591 0.4535 MASSACSSPRNGSEKSVNSVKKVGQESEGLIVPPKDESYLQSMEVKVVVFDKTRTLTIGKPVVVSAVLFSKISMEELCDMTIAVEASSKHPIAKAVVAHAKKLRRKFGSCTEKLLDVKDFEVHMGAGVSGKANEKTVLDGNKRLCYVFNPSPFEMKGMSVPMVGDGINDSPASAAADVGKAIGAGTDIAIEAAWKM* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0647 196 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 38 149 - -
Lja3g0647 196 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 154 193 - -
Lja3g0647 196 SUPERFAMILY HAD-like 154 193 IPR036412 -
Lja3g0647 196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 51 151 IPR023299 GO:0000166
Lja3g0647 196 Pfam haloacid dehalogenase-like hydrolase 45 141 - -
Lja3g0647 196 Gene3D - 44 59 IPR023214 -
Lja3g0647 196 Gene3D - 158 193 IPR023214 -
Lja3g0647 196 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g0647 196 Gene3D - 60 145 IPR023299 GO:0000166
Lja3g0647 196 PANTHER COPPER-TRANSPORTING ATPASE HMA4 154 193 - -
Lja3g0647 196 PANTHER COPPER-TRANSPORTING ATPASE HMA4 38 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0647 Lja-Chr3 6451372 6458216 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0647 153 193 Primary Pumps ATPases AT5G44790 75.610 3.21e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0647 K17686 - gmx:100793894 164.851