Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0638 ATGGACCATGAAAAGACTGAATGCCAAGCTCCTCCAGAGAGTCCCATGTTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAGTGCCACAAAGACATGGTGCTGAAACAGGAGCAGGCCAAGCTTGCAGCAACCTCCATCGGAAATATTATGAATGGATCATCAAGCAGCATTGAAACTGAGCCGACTGAACCTGTTGTTGCTGCCAGCGTGGATATCCCAGTTATTTCAGTAGAGCCTAAAACTATCTCTTCACAACCTGTATTTGGTTTTGGTTCTGGTTCAGGGGAGAGTGGTGAGGAAAAGCCAAAAGATGGTCCTAAACGTTGTAGCAGCTGCAATAAACGGGTTGGTTTGACAGGGTTTAACTGTCGATGTGGTCATCTTTTCTGTGCTGTACATCGCTACTCAGACAAGCACGATTGCCCATTCGATTACCGCACCGCTGCACGGGATGCCATTGCTAAAGCAAACCCCGTTGTGAAGGCTGAGAAGCTTGATAAGATCTAA 534 0.4644 MDHEKTECQAPPESPMLCINNCGFFGSAATMNMCSKCHKDMVLKQEQAKLAATSIGNIMNGSSSSIETEPTEPVVAASVDIPVISVEPKTISSQPVFGFGSGSGESGEEKPKDGPKRCSSCNKRVGLTGFNCRCGHLFCAVHRYSDKHDCPFDYRTAARDAIAKANPVVKAEKLDKI* 178
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0638 177 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 177 - -
Lja3g0638 177 Pfam AN1-like Zinc finger 118 154 IPR000058 GO:0008270
Lja3g0638 177 Gene3D - 1 69 - -
Lja3g0638 177 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Lja3g0638 177 ProSiteProfiles Zinc finger AN1-type profile. 112 158 IPR000058 GO:0008270
Lja3g0638 177 SUPERFAMILY AN1-like Zinc finger 106 172 IPR035896 -
Lja3g0638 177 MobiDBLite consensus disorder prediction 95 116 - -
Lja3g0638 177 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Lja3g0638 177 Gene3D - 101 173 IPR035896 -
Lja3g0638 177 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 177 - -
Lja3g0638 177 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lja3g0638 177 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Lja3g0638 177 SMART AN1_Zf_4 118 155 IPR000058 GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g0638 Lja-Chr3 6411137 6414898 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0638 4 177 C2H2 Transcription Factor Family AT3G52800 41.954 2.28e-39 130
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0638 - - gmx:100500070 291.197
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0638 3 6411137 6414898 Lja3g0638 3 6411137 6414898 ECH
Lja1g1261 1 12984991 12987530 Lja3g0638 3 6411137 6414898 ECH
Lja5g2254 5 38717208 38719502 Lja3g0638 3 6411137 6414898 ECH