Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0637 ATGAATAACAATAACTGGCTTTCTTTTCCCCTCTCTCCTTCTCATTCTTCATTACCTGTTCATGATCTCCAAGCAACTCAATATCATCAATTTTCTCTTGGACTAGTGAATGACAACATGGAAAACCCCTTTCAAAATCATGATTGGAATCTGATTAATACTCATGGTAGCAATGAAGCTCCAAAGGTTGCAGATTTTCTTGGTGTGAACAAATTTGAAAATCAGTCAGATCTTGCTTCCTTAAATGAAATGCAGTCAAATAGTTCAGATTATCTGTTCACAAATAATAGTCTTGTGCCTGCAGTGCAAAATCCAGTGGTAAGCACATGTAGTAATGGTAATGAGTCTCAAGAAAATGGTAATGGTAATTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGTGAAACCAGTGGTGACACTAGTACCAACACTATCGAAGCTGTGCCTAGAAGAACCTTGGAGACATTTGGGCAAAGAACATCTATATATCGAGGTGTAACAAGACATAGATGGACCGGAAGGTATGAAGCTCACCTTTGGGACAATAGCTGTAGAAGGGAAGGACAGTCAAGGAAAGGTCGCCAAGTCTATTTGGGTGGATATGATAAAGAAGACAAAGCAGCTAGGGCCTATGATTTAGCTGCCCTTAAGTACTGGGGGACATCCACTACTACCAACTTTCCGGTTAGCAACTATGAGAAGGAAGTGGATGACATGAAGCATATGACAAGACAAGAATTTGTGGCTTCCATTAGAAGGAAAAGCAGTGGTTTCTCGAGGGGTGCTTCAATGTATCGTGGAGTTACAAGGCATCATCAACATGGGAGGTGGCAAGCAAGGATTGGAAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCGGTACTGAGGAAGAGGCGGCAGAAGCTTACGACATAGCTGCGATAAAGTTCAGAGGCCTTAACGCCATCACCAACTTTGACATGAACCGTTACGATGTGAAAGCCATTCTAGAGAGCAACACCCTCCCAATCGGAGGAGGAGCTTCAAAAAGGCTAAAAGAAACTCAAGCTCTGGAATCTTCAAGAAAACGTGAAGATCAGATGATTGCACTCGGCTCAACATTTCATCAATACGGAATTGCAACCCCATCAAGCTCTACAAGGCCACAACCTTACCCGCTAAACCTAATGCATCATCACAATCAGTTTGAACAACAGCCTCAACCATTTCTAACCTTACAAAACCATGACATTAATTCTCAATACTCCCATCATCAGCAGGACCCTTCGTTTCAGCAGAGTTACATTCAAACACAGCTTCAGTTGCAGTTGAATCAACACGGTGGTGGTGGTTCTAGTTATGCTCAAGAAACAGCTCCTCATCAGAACAGTGAGTTCTATAATGGTGGAAATTATTACCTTCAGAACCTTCAGGGAATGATGATGAACAATAGTATGGGGTCTTGTTCTTCATCGTCTGTGTTGGAGAATGATCATAATGCTGCTGCTGGTGGGGCTTCTTTTGTGGGTCCCGCAGCGGAGGAACTTGGGTTGGTTAAGGTTGATTATGACATGGATGCTGCTGCTGGCGGTGGTTATGGTGGTTGGTCAGCGGCGGAGTCCATGCACACGTCGGCGGCTGGTGGTTTGTTTAATATGTGGAATGAGTGA 1671 0.4315 MNNNNWLSFPLSPSHSSLPVHDLQATQYHQFSLGLVNDNMENPFQNHDWNLINTHGSNEAPKVADFLGVNKFENQSDLASLNEMQSNSSDYLFTNNSLVPAVQNPVVSTCSNGNESQENGNGNLQSLTLSMGSGKDSTCETSGDTSTNTIEAVPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGTSTTTNFPVSNYEKEVDDMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTEEEAAEAYDIAAIKFRGLNAITNFDMNRYDVKAILESNTLPIGGGASKRLKETQALESSRKREDQMIALGSTFHQYGIATPSSSTRPQPYPLNLMHHHNQFEQQPQPFLTLQNHDINSQYSHHQQDPSFQQSYIQTQLQLQLNQHGGGGSSYAQETAPHQNSEFYNGGNYYLQNLQGMMMNNSMGSCSSSSVLENDHNAAAGGASFVGPAAEELGLVKVDYDMDAAAGGGYGGWSAAESMHTSAAGGLFNMWNE* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0637 556 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 527 - -
Lja3g0637 556 Pfam AP2 domain 167 225 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 Pfam AP2 domain 270 319 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 SUPERFAMILY DNA-binding domain 166 235 IPR016177 GO:0003677
Lja3g0637 556 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 PRINTS Ethylene responsive element binding protein signature 309 329 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 Gene3D AP2/ERF domain 167 235 IPR036955 GO:0003700|GO:0006355
Lja3g0637 556 Gene3D AP2/ERF domain 269 329 IPR036955 GO:0003700|GO:0006355
Lja3g0637 556 ProSiteProfiles AP2/ERF domain profile. 269 327 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 ProSiteProfiles AP2/ERF domain profile. 167 233 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 MobiDBLite consensus disorder prediction 111 147 - -
Lja3g0637 556 CDD AP2 166 235 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Lja3g0637 556 SMART rav1_2 269 333 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 SMART rav1_2 167 239 IPR001471 GO:0003700|GO:0006355
Lja3g0637 556 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 527 - -
Lja3g0637 556 CDD AP2 268 327 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0637 Lja-Chr3 6406087 6409108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0637 1 556 AP2-EREBP Transcription Factor Family AT1G51190 62.248 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lja3g0637 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0637 K09285 - gmx:100788471 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0637 3 6406087 6409108 Lja3g0637 3 6406087 6409108 ECH