Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0636 ATGGATTCCGTTACACCACCTCCACCGTCGCCGGAGCTTGACCTCGACAACCTAAAAGCACTTCAAGTCCTCGGCAAAGGTGCCATGGGCACCGTCTTCCTCGTCCAAGACACCGCAACAACCACCACCGCAACAACCACCACCTTCGCTCTAAAAGTTGTTGATAAAACCTCCCTCCAAGCCAAACGCGACGCCGACCGCCGCGCCCGTTGGGAAATCGAGGTTCTCTCCACGCTCTCCCACCCCTTCCTCCCTTCCCTCCTCGGCACATTTGAGTCCGACCAAATCCTAGCGTGGGCCCTACCTTACTGCTCCGGTGGTGACCTCAACGTCCTCCGTTACCGCCAAAACGACCGCGTTTTCTCGCCCTGCGTTATCCGCTTCTACCTCGCCGAGATTCTCTGCGCCATCGATCACCTCCATTCCACCGGCATCGCCTACCGCGATCTCAAACCGGAAAATGTCCTCATCCAACACTCCGGCCATGTCACCCTCACCGACTTCGACCTCTCCCGCAAACTCGCCTTCAGAACCACCGTGGATTGTTCAAAAACCTTGCCAGATTCGAAGCTTCCAGAGCCTCAACGGAAAAAGCATCACCACCACCGCCGGAACTTCTCCCGCTGGATCCCCCTCCTCCCGACGGACGTTAAGCATCCGAAGAATCCTCTGAAGAAGGCGAAGTCCGCCAGAGTCAGCCCGGTGAGCCGCCGGAAGCTAAGCTTCTCCAACGGCGAGCGGTCCAACTCGTTCGTCGGAACCGAGGAATATGTCTCGCCGGAGGTGGTCCGCGGCGACGGACACGAGTTCGCCGTCGACTGGTGGGCCCTCGGGATTCTGGCCTATGAGATGCTATACGGCAAAACGCCGTTCAAGGGGAAGAATCGCAAGGAGACGTTCCGGAACGTGCTGACGAAACCGCCGGAGTTCGTCGGGAAACGTTCGCCATTAACGGACCTGATCGAGATGCTTTTGGAGAAGGAACCTACAAAGAGGTTGGGTTACACGCGCGGTGCGTCGGAGATTAAGGAGCACGAGTTCTTCAGAGGAATGCAGTGGGAGTTTTTGACGGAGGTTGTGCGGCCGCCGTATATTCCGGCGAGGGATGACGGCGACGGGGAATCGACGGAGGAATTAGTCGCCGGAAATGGTGGCGTGGATATTAGAGATTACTTCCAGAACTCGAAACCACCGCCGTCGTCGACGCCGCCTTCGCCGTTACCGTCACCGTCTTGTAAATTTAGGAGCAAAAGCACTGTTTCTCTAACAGAATTCTAA 1278 0.5712 MDSVTPPPPSPELDLDNLKALQVLGKGAMGTVFLVQDTATTTTATTTTFALKVVDKTSLQAKRDADRRARWEIEVLSTLSHPFLPSLLGTFESDQILAWALPYCSGGDLNVLRYRQNDRVFSPCVIRFYLAEILCAIDHLHSTGIAYRDLKPENVLIQHSGHVTLTDFDLSRKLAFRTTVDCSKTLPDSKLPEPQRKKHHHHRRNFSRWIPLLPTDVKHPKNPLKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILAYEMLYGKTPFKGKNRKETFRNVLTKPPEFVGKRSPLTDLIEMLLEKEPTKRLGYTRGASEIKEHEFFRGMQWEFLTEVVRPPYIPARDDGDGESTEELVAGNGGVDIRDYFQNSKPPPSSTPPSPLPSPSCKFRSKSTVSLTEF* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0636 425 Pfam Protein kinase domain 243 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0636 425 Pfam Protein kinase domain 20 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0636 425 PANTHER FLIPPASE KINASE 1-RELATED 13 397 - -
Lja3g0636 425 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 13 397 - -
Lja3g0636 425 Gene3D Phosphorylase Kinase; domain 1 18 107 - -
Lja3g0636 425 MobiDBLite consensus disorder prediction 411 425 - -
Lja3g0636 425 MobiDBLite consensus disorder prediction 366 425 - -
Lja3g0636 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Lja3g0636 425 Gene3D Transferase(Phosphotransferase) domain 1 108 176 - -
Lja3g0636 425 ProSiteProfiles Protein kinase domain profile. 18 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0636 425 SMART serkin_6 18 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0636 425 SUPERFAMILY Protein kinase-like (PK-like) 15 396 IPR011009 -
Lja3g0636 425 ProSitePatterns Protein kinases ATP-binding region signature. 24 52 IPR017441 GO:0005524
Lja3g0636 425 Gene3D Transferase(Phosphotransferase) domain 1 245 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0636 Lja-Chr3 6390448 6392037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0636 13 410 AGC Kinase Gene Family AT3G20830 60.794 4.92e-162 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g0636 Pkinase 9.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0636 - K08286 gmx:100785281 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0636 3 6390448 6392037 Lja3g0636 3 6390448 6392037 ECH
Lja3g2709 3 39403896 39405418 Lja3g0636 3 6390448 6392037 PCT