Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0633 ATGGAGTCAGATCTTCAGCACCATGCTCCTCTGTTTCTGGATCATCCACAGCACCAGCAGCAGCAGATGAATTCTGGGTTGTCACGGTACAAATCAGCTCCGAGTTCGTATTTTTCGAATATCATTGACAGGGATTTCTATGAGGACCTCTTCAAACGCCCCTCGAGCCCTGAAACCGAGCGAATCTTCGCCCGGTTAATGAATAGTCTTGGTGATAGTGATGGTGATGGTGCTCCTGCTGATGCAGAGGATTCACTTGTTGCTCAGAATCTCCCAAGTGTTCAGCAGCAACAGCAGCCGCTGCAGCTGCCTGCTGTGAAGGAAGAAATTGACCAACAATCTCAAGCTATGCCATCCATGAGTACTCAACCTGTAGTTCTTCAACAGCAGCAGCAGCAACAACAACAACAACAGAACCAGAACCCAAGCAACATCAATAGTTTTCAGAATCTTTACCCAAGCTCTGGAAGACCACCTTTGCCGAACCAGATGAAGACAGGTCGTGCCAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTGCAAACATTAACATTGAAACTGGCTATGCTGCTATAAGAGGAATGGGAGCTTTTGGAGCTGGTAGTAACAAGACCGAGGAAGCAGCCTTTTCTCCTTCAGCGCGGCTGCAGAATCCACCAAACTACTCATCAGGGTTACTGTCTCCAAGAGCTGAAATTGGAAGTAAAAGCAACACGCAAAACAATCCAGAAGCTGAAGGTTTTGCTGAGACAAGGGGGAATGAATTCCCAGGTTTTCCATGGGATGATTCTGCAGTCATGTCTGAGAATTTGAGTGGTCAAAAAAGATTTAGAGATGATGATGTAAAACCATTTTCTGGTTTAAATGCAGCTGAAAGTCAGAATGAAACAGGAGGCCAGGCTCCTGCACCTTTGGCTCATCACATGAGTTTGCCGAATACTTCAGCGGAAATGGCAGCCATTGAGAAGTTTTTGAAGTTCTCAGATTCTGTTCCATGCAAAATTCGTGCTAAGCGGGGATGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTGAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTTCAAGATCTTGTCCCCAACATGGATAAGCAAACAAATACATCAGACATGTTGGACTTAGCTGTTGATTACATTAAAGACCTTCAAATGCAAGTTCAGACTCTTTCAGATTGTCGCGCAAAGTGTACGTGTAAACACAAGCAGCAATGA 1245 0.4522 MESDLQHHAPLFLDHPQHQQQQMNSGLSRYKSAPSSYFSNIIDRDFYEDLFKRPSSPETERIFARLMNSLGDSDGDGAPADAEDSLVAQNLPSVQQQQQPLQLPAVKEEIDQQSQAMPSMSTQPVVLQQQQQQQQQQQNQNPSNINSFQNLYPSSGRPPLPNQMKTGRANLIRHGSSPAGLFANINIETGYAAIRGMGAFGAGSNKTEEAAFSPSARLQNPPNYSSGLLSPRAEIGSKSNTQNNPEAEGFAETRGNEFPGFPWDDSAVMSENLSGQKRFRDDDVKPFSGLNAAESQNETGGQAPAPLAHHMSLPNTSAEMAAIEKFLKFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVDYIKDLQMQVQTLSDCRAKCTCKHKQQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0633 414 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g0633 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Lja3g0633 414 MobiDBLite consensus disorder prediction 108 166 - -
Lja3g0633 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 407 IPR036638 GO:0046983
Lja3g0633 414 MobiDBLite consensus disorder prediction 230 249 - -
Lja3g0633 414 MobiDBLite consensus disorder prediction 108 161 - -
Lja3g0633 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 412 - -
Lja3g0633 414 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 412 - -
Lja3g0633 414 MobiDBLite consensus disorder prediction 230 258 - -
Lja3g0633 414 MobiDBLite consensus disorder prediction 279 310 - -
Lja3g0633 414 MobiDBLite consensus disorder prediction 15 30 - -
Lja3g0633 414 Gene3D - 344 414 IPR036638 GO:0046983
Lja3g0633 414 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
Lja3g0633 414 SMART finulus 349 399 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0633 Lja-Chr3 6337161 6341264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0633 1 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 42.243 1.75e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g0633 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0633 - - lja:Lj0g3v0238249.1 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0633 3 6337161 6341264 Lja3g0633 3 6337161 6341264 ECH
Lja3g0633 3 6337161 6341264 Lja3g2706 3 39183883 39187509 ECH
Lja1g1251 1 12881581 12885176 Lja3g0633 3 6337161 6341264 ECH
Lja5g2271 5 39627015 39630348 Lja3g0633 3 6337161 6341264 ECH