Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0623 ATGTCACTTACATTGGAAATCCAAGAAAAAGTGAAGAATTGTGGTCGTATAGGAGTCCATGCTGTCAGTGAAATTGCTTCAGATTTAACTCCAGAGTATCTTGAACATCATGGACTCAAATCCATTCCTAAGTCTGTGGCTTATGGCTACACTGCTTCAGGATATGGGTTTGTTCAAGACATGTCTTATGCCTACATTCATGAATTTACTAGAACATCCATGGCTGGGAAAATTCGGAGATTTAAAGGTGGATATACAAGTCTCTGGCAGAAGATTGCTGAATCACTTCCGTTAAAACTTCGGTATAACACTGAAGTATTGGCAATCAGGAGGGACTCTGATGGTGTCACCGTTAATGTCAAGAGCTCAAATGAAGTTGAAACAATGGAATTTGATAAGATTATAGTTTCTGGTTCATTTCCATTGAACTATGGAAGAATTTACAGATCGCCTTCAACTAGCATTGAATGCGAAAATGAAGTAATGGATACAAGTGATCTTGAAAAGGACCTGTTCAGCAAAGTTGAGACCAATGACTACTACACCACGGCCTTAAAGATCAAAGGGCTAGAACATTTGCCTGTTGGATTTTATTATTTTAATGAATATATGGAAGATCCTAGCACAATTGGAAATCCAGTTGCAATGCAGAAATTTTATGCTAACACTGATATATTCTTGTTCTGGTCCTATGGGAATGCTGTTGATATTAAGGGACCAACTGTCACAGAGCTCGCAATCAAGGCAGTAAAGTCCATGGGGGGAGATGTTGAGAATGTCATTCTTCAACGCTGCTTTAAGTATTTTCCTCATGTTGGCAGCCAAGATATGAAAAATGGATTCTATGAGAAGTTGGAATCAAAGCTTCAAGGTTCAAAGAATACTTATTATGTAGGCGGGCTTATGGCGTTTGAGCTTACAGAGAGAAATTCATCTTATGCCATGGCTCTGATTTGCAAAAACTTTGCAAATAGCAATGATTTGCCAATATTTCCTTACACTAAGAATTTGTTTCCCTTGCAAACTGAGTTCCAAAAGAAGATTCCTAGAGAGTTAGGTGAATTGCCAGAAGTGCAATTTCCTAATTTTCCTATTTTAAATAGCTACTTAAAGCACTGGGGAACTCATCCAATTACTCAAAACAGGACTCTTTATACTTGGATTAATGAAGAAGGGACCTCGGTATGCCGCAGGACCTATGCAGAACAACATCTTAATGCTTCTTGCATTGCTCATAAGCTCTTAACAAGCCAAAAGCCAGTTATCAAGCCTGGTGACAGGGTTCTCCTTGTCTATGTCCCCGGTTTGGATTTCGTTGATGCCTTCTTTGGATGCCTAAGAGCTAAAGTCTTACCAGTCCCCATCATTCCACCAGATCCTATGCAAAGAGGTGGACAAGCACTTATGAAAATTGAAAATATTGCCAATTCATGTGGCATAGTGGCTATTCTATCAACAGTAGCTTATCACTCAGCTGTCCGTGCCGGTTCATTGAAAAATTTGATATCATTAACTGGAAAAAAGGGGAAATCATCAGCTAGGTGGCCGAATCTTCCATGGCTGCACACTGATACTTGGGTCAAGAACTCCAAAACTATGGCTTTGGAACACCTTGATAATCAATGTGAACCAAAGCCTAGTGATGTATGTTTCTTGCAATTCACCTCAGGTTCCACTGGTGATGCTAAAGGAGTCATGATCTCTCATGGTGGGCTTATTCACAATGTGAAGTTGATGAGAAGTCGATATAAGAGCACCTCAAGGACAGTGTTAGTAAGTTGGCTTCCTCAGTATCACGACATGGGGCTGATCGGGGGACTTTTTACAGCTCTTGTTAGTGGTGGATCTGCAGTTTTATTTTCACCAATGACATTCATCAAGAAACCACTCTTGTGGCTTGAAACTATCAACAAGTTCAAAGCAACTCATAGTGCTGGCCCTAACTTTGCGTTCGAGTTATTGATTCGAAGATTGGAATCTGACAAGGATAGGCTTCAGAACTTGGACCTCTCATCCTTGGTTTTTCTTATGGTTGCTGCTGAACCAGTGAGACACAATACCCTGAAAAGATTCATTGAGCTAACCTCTCCTCTTGGCTTAAATCAAAAGGTGATGGCTCCTGGATACGGCTTAGCTGAAAATTGTGTGTTTGTCAGCTGTGCATTTGGACAAGATAAGCCTGTCATTGTTGATTGGCAGGGAAGAGTTTGTTGTGGGTATGTTCCACACCAGGATGCAGATGTTGACATTAGAATAGTTGATCCTGAGACTTGTGAAGAGCTTCAAGAAGATGGAAAGGAGGGAGAAATCTGGATTAGTAGTCCAAGTGCAGGAGTAGGATACTGGGGAAGAGAAGAGCTGAGTCAGAAAACTTTCAGGAATGAACTTCAGAATCAACCTGGGCTCAACTACACAAGAACCGGAGACTTGGGACGAGTTATAGATCAGAAGCTATTCATCACCGGAAGAATCAAGGATCTTATCATTGTTGCTGGAAGAAACATTTACTCAGCAGATGTTGAAAAGACAGTTGAAAACTCATCAGAGTTTCTTCGTCCGGGTTGTTGTGCTGTTGTTGGGGTCCCTGAGGAAATTCTATCAGCAAAGGGAATTTCCATTCCAGATGGCTCTGATCAGGTTGGATTGGTTGTGATTGCAGAAGTAAGGGATGGTAAACCAGTTACCAAAGAGGTTGTTGAGAGTATCAAGACATGTGTGGCCGAAGAACATGGAGTCAGTGTTGCTTCTATCAAGTTGGTCAAGCCTAGAACCATCAGCAAAACAACATCAGGAAAAATCAGGAGATTTGAGTGTATCAAACAATTCGCTGATGAGACGCTGAATTTGGTACCACTAAGTCCAAATACTGTTTTCACAAAGAAATATATGGTAAGGTCATTTACTACAGCAACATGCAGGGCAGAAGAAACACCACAGCCTAAGCTAAGGATCAGTAAAAATGACATTCTAGAGTTCTTGAAAGTGCTTATTTCTGAGCAGACTGGAATCCCAATCACCAAAATCTCTGTTAAAGACCAGCTTACATCCTATGGAATTGACTCAATTGGTGTGGTTAAAGCTACTCAAAAACTGTCAGATTTTCTGGGAACACCAGTTGCAGCTATTGATGTTTTCACTGCATCCTGCATTCAAGAATTGGCTAACTTCTCTGAGGATCTTATATTAAAGTCTCAGCCTAAGCTTGCAAGCAATCCATCCATTATTCCAGAAGATGACATTGATTCTGCTGAATTGGTTGTGGAGGTACCCCCAAAGTCTCACCAGTTCGGTATCCGTTTACTTCAACTCTTAGCAATTATTTACATTTCTACCGTGCTGGCCTCTCCTGCTTATCTATCCATCAATGCTTTTCTAAATTTCTTCCAAAGTGTCACTAATTCATTAGATGGAGTGGCTTGGTTAAATTACTCAATTTCCCTGAAAATATCCTCTAAAGTTCTGGCAATACACCTCAGAGGAACAGTGTTTCTGAAATACTGGTTTGAGATGTTGGGTGCAAGAATTGGATCCTCAGTTTTGCTTGATACAGTTGACATCACAGACCCATCTCTGGTGTCAATTGGAGATGAAGCTGTCATTGCAGAAGGTGTTTTGGTGCAAAGCCATGAGGTAAAAAATGGAGTTGTAAGTTTCCATCCTATTAGGATTGGCAAATGTTCTTCTATTGGGCCTTATGCTGTTCTTCAGAAAGGAAGTGTTATTGGAGAGGGTGCTGAGGTACAGGCCTTGCAAAAAGTTGGTGGAGACCAGCATGTCCTGAAACCTTCCAAGTTTAATAATGTTGACAAGAATGCAGAGCTGCCTGTTCTTCCCAGCAAAACTCAACATGATATCATCTACCACTTTATTGGGATCTATCTTGTAGGCTTTCTCAGCTCCCTTGCTGCAGCCATTGCCTACTTCTTATATATCAGATTCTCCAAGAAATCTCCATCACTCCAGCACTTTTCATTTGTTTGCTTATGTGGAGCCTTCCACTGGATCCCCTTCACCATCATTGCTTATGCTACCATGTTCTCTGATGTCCCATCAAATCCCATCACCTTTGCCATTTCATTTACCACAGGCTACTTGCTCCATGGTCTCATACTCATCACTCTCACTAGTGCTTTTACTCGTCTATTCGCAACCAATCAAAAGCAAACTCAGTTTAAAACTTGGCTTCGAAATCAAATGACTATGTCCTGTCACCTCAGATGTGCAAAGCTTCTCTCAGGAACAGAAGCCTTCTGCATATATTTACGCCTTTTGGGCGCGGAAATTGGCAAGCATTGTTCCATCAGAGCCATCAACCCAGTTTCAAATCCAGAGTTAATGTCAATTGGTGCCGGTGTCCATCTCGGAGATTTTAGTCGGATAATTACTGGTTTTCATTCTTCCAATGGATCATATGCTTGTGGAAAAATTGAGATTCAAGATAATTCAGTCACTGGGAGTCAAAGCCTTATTCTTCCTGGTTCTCTTGTCCAAAAGAATGTCATTCTGGGTGCACTTTCAGTTGCTCCAATGAATTCTACCCTCCAAGAGGGTGGTGTGTACATTGGATCACAATCCCAAGTTGTTATCAGGAACTCAATGAACGCTTCAGATGAAATGATGGAGGAGATGAATAACGTGGAATGCAAGAAAAGAAATGGTGATTTAAAAGATGATTCACAAAGAGTAACCTTGACCAGAACATGGTATCAGACCTTCACAGCACTCTTCACTCAGCCATTTCTACAAACAGCTTTGCCTCATCTTGTGGTGGGCTTAGCAGTTTATGCTCCTTTGAACTTAATTGTCCACTTAAAGCATGCCAAGAAGCTTCCAATGTTCTGGTTGCTTCCTCTGATTTGGATTCTCTCAGGTGCTTTATCTGCATTGGCTTGTGTAGTAGCTAAATGGGTTCTTGTAGGAAAGAAGAAACAAGGTGATATTGTTCCTATATGGAGTATAAGGATCACATTGGACAGCACATGGCAGGCCATTAGAACTTTAGTTGGAGACTATTTCATGGACATGACAAGTGGGTCATTTTTGTTTGTGCTGTGGATGAAGATGATGGGTGCAGATGTTGACATGGATCATGATGTTTATGTTGACAGCATGGGAGCATTGTTGAACCCTGAGATGGTGAAGATTGAGAGAGGGGGTAGTGTGGGAAGGGAAGCTTTGCTGTTTGGACACATATATGAAGGGGAAGGAGGGATGGTGAAGTTTGGAGAGATCAAAATTGGAGAATATGGGTTTGTAGGGAGTAGAGCTATGGCTATGCCTGGTGTACAATTGGAGAATGAAGGTAGTCTTAGTGCTTTGTCACTTGCCATGAAAGAAGAAATCATTAGGTCAAGGTAA 5358 0.4121 MSLTLEIQEKVKNCGRIGVHAVSEIASDLTPEYLEHHGLKSIPKSVAYGYTASGYGFVQDMSYAYIHEFTRTSMAGKIRRFKGGYTSLWQKIAESLPLKLRYNTEVLAIRRDSDGVTVNVKSSNEVETMEFDKIIVSGSFPLNYGRIYRSPSTSIECENEVMDTSDLEKDLFSKVETNDYYTTALKIKGLEHLPVGFYYFNEYMEDPSTIGNPVAMQKFYANTDIFLFWSYGNAVDIKGPTVTELAIKAVKSMGGDVENVILQRCFKYFPHVGSQDMKNGFYEKLESKLQGSKNTYYVGGLMAFELTERNSSYAMALICKNFANSNDLPIFPYTKNLFPLQTEFQKKIPRELGELPEVQFPNFPILNSYLKHWGTHPITQNRTLYTWINEEGTSVCRRTYAEQHLNASCIAHKLLTSQKPVIKPGDRVLLVYVPGLDFVDAFFGCLRAKVLPVPIIPPDPMQRGGQALMKIENIANSCGIVAILSTVAYHSAVRAGSLKNLISLTGKKGKSSARWPNLPWLHTDTWVKNSKTMALEHLDNQCEPKPSDVCFLQFTSGSTGDAKGVMISHGGLIHNVKLMRSRYKSTSRTVLVSWLPQYHDMGLIGGLFTALVSGGSAVLFSPMTFIKKPLLWLETINKFKATHSAGPNFAFELLIRRLESDKDRLQNLDLSSLVFLMVAAEPVRHNTLKRFIELTSPLGLNQKVMAPGYGLAENCVFVSCAFGQDKPVIVDWQGRVCCGYVPHQDADVDIRIVDPETCEELQEDGKEGEIWISSPSAGVGYWGREELSQKTFRNELQNQPGLNYTRTGDLGRVIDQKLFITGRIKDLIIVAGRNIYSADVEKTVENSSEFLRPGCCAVVGVPEEILSAKGISIPDGSDQVGLVVIAEVRDGKPVTKEVVESIKTCVAEEHGVSVASIKLVKPRTISKTTSGKIRRFECIKQFADETLNLVPLSPNTVFTKKYMVRSFTTATCRAEETPQPKLRISKNDILEFLKVLISEQTGIPITKISVKDQLTSYGIDSIGVVKATQKLSDFLGTPVAAIDVFTASCIQELANFSEDLILKSQPKLASNPSIIPEDDIDSAELVVEVPPKSHQFGIRLLQLLAIIYISTVLASPAYLSINAFLNFFQSVTNSLDGVAWLNYSISLKISSKVLAIHLRGTVFLKYWFEMLGARIGSSVLLDTVDITDPSLVSIGDEAVIAEGVLVQSHEVKNGVVSFHPIRIGKCSSIGPYAVLQKGSVIGEGAEVQALQKVGGDQHVLKPSKFNNVDKNAELPVLPSKTQHDIIYHFIGIYLVGFLSSLAAAIAYFLYIRFSKKSPSLQHFSFVCLCGAFHWIPFTIIAYATMFSDVPSNPITFAISFTTGYLLHGLILITLTSAFTRLFATNQKQTQFKTWLRNQMTMSCHLRCAKLLSGTEAFCIYLRLLGAEIGKHCSIRAINPVSNPELMSIGAGVHLGDFSRIITGFHSSNGSYACGKIEIQDNSVTGSQSLILPGSLVQKNVILGALSVAPMNSTLQEGGVYIGSQSQVVIRNSMNASDEMMEEMNNVECKKRNGDLKDDSQRVTLTRTWYQTFTALFTQPFLQTALPHLVVGLAVYAPLNLIVHLKHAKKLPMFWLLPLIWILSGALSALACVVAKWVLVGKKKQGDIVPIWSIRITLDSTWQAIRTLVGDYFMDMTSGSFLFVLWMKMMGADVDMDHDVYVDSMGALLNPEMVKIERGGSVGREALLFGHIYEGEGGMVKFGEIKIGEYGFVGSRAMAMPGVQLENEGSLSALSLAMKEEIIRSR* 1786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0623 1785 Pfam Flavin containing amine oxidoreductase 58 140 IPR002937 GO:0016491
Lja3g0623 1785 CDD FAAL 371 944 IPR040097 GO:0008610
Lja3g0623 1785 PANTHER AMINE OXIDASE 1557 1785 - -
Lja3g0623 1785 ProSitePatterns Phosphopantetheine attachment site. 1016 1031 IPR006162 -
Lja3g0623 1785 Gene3D - 85 142 IPR036188 -
Lja3g0623 1785 Gene3D - 354 824 IPR042099 -
Lja3g0623 1785 SUPERFAMILY ACP-like 984 1062 IPR036736 -
Lja3g0623 1785 ProSiteProfiles Carrier protein (CP) domain profile. 987 1061 IPR009081 -
Lja3g0623 1785 Pfam Phosphopantetheine attachment site 993 1056 IPR009081 -
Lja3g0623 1785 Gene3D - 825 952 IPR045851 -
Lja3g0623 1785 Gene3D - 976 1059 IPR036736 -
Lja3g0623 1785 SUPERFAMILY Acetyl-CoA synthetase-like 376 949 - -
Lja3g0623 1785 ProSitePatterns Putative AMP-binding domain signature. 552 563 IPR020845 -
Lja3g0623 1785 Gene3D Hexapeptide repeat proteins 1414 1559 - -
Lja3g0623 1785 Gene3D Hexapeptide repeat proteins 1155 1259 - -
Lja3g0623 1785 SUPERFAMILY Trimeric LpxA-like enzymes 1159 1259 IPR011004 -
Lja3g0623 1785 SUPERFAMILY FAD/NAD(P)-binding domain 49 147 IPR036188 -
Lja3g0623 1785 PANTHER AMP-BINDING ENZYME 1 1149 - -
Lja3g0623 1785 PANTHER AMP-BINDING ENZYME 1148 1551 - -
Lja3g0623 1785 PANTHER AMP-BINDING ENZYME 1557 1785 - -
Lja3g0623 1785 SUPERFAMILY Trimeric LpxA-like enzymes 1424 1526 IPR011004 -
Lja3g0623 1785 Pfam AMP-binding enzyme 394 830 IPR000873 -
Lja3g0623 1785 Gene3D - 256 323 IPR036188 -
Lja3g0623 1785 PANTHER AMINE OXIDASE 1 1149 - -
Lja3g0623 1785 PANTHER AMINE OXIDASE 1148 1551 - -
Lja3g0623 1785 SUPERFAMILY Trimeric LpxA-like enzymes 1670 1778 IPR011004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0623 Lja-Chr3 6214392 6220467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0623 517 863 Monolignol Biosynthesis Gene Families AT1G20480 25.549 1.47e-20 96.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0623 3 6214392 6220467 Lja3g0623 3 6214392 6220467 ECH
Lja3g2691 3 38878914 38886774 Lja3g0623 3 6214392 6220467 PCT