Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0613 ATGGACTCCGAGGATGATATGCACGATGCCAACGACGTTGAGTCTTTCGACGACGATTTCTACAGTGGCGACGCGGAGGAAGCTCCCTTGGACTACTACAGCGACTACGATGACGACGCCGATGATTACTTCGACGATTCCGATAGGATTGAGTCTCGTTGCCCTGAGCACAATTTTACCATCTTGAAGGAATCAGATATTCAGCTAAGGCAGGAAGAGGATATCAATAGAGTAGCAGGGGTTCTTTCCATATCAAGAGTTGCTGCAAGCATACTACTTCGTCACTACAACTGGAGCGTCAGTAAAGTGCATGATGCTTGGTTTGCTGATGAAGAGGGAGTTAGGAAAGCAGTTGGCTTGTTAGAGAAGCCAGTTGTAGAGTATCCTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGTGCTAGGATTGAAGTGGCTTCTTGTGGTCATCCCTACTGTTTCTCATGCTGGGAAGGATATATTACCACATCCATTAATGATGGTCCTGGGTGTTTGATGCTGAGATGTCCCGATCCCACTTGTAGTGCGGCTGTTGGTCAAGATATGATTGATCTATTAGCATCCAATGAAGATAAACAAAAGTATGCCCGTTACCTTCGTAGATCTTATATTGAAGACAATAAGAAGTCAAAGTGGTGTCCTGCTCCTGGATGTGAATATGCAGTTACTTTTGATGCTGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAATTGCACCGAGGAGGCTCATCGTCCAGTGGACTGTGGCACCGTAGCAAAGTGGATTTTGAAAAACAGTGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAATCAAGGATGCATGCACATGACATGCACTCCTCCATGTAAATATGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGTAGCTAGGCAAGAGGGAGTGTATGATGATTCTGAACGAAGAAGAGATATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAAACTTCAAGGCAAAAAGCTCTTTCAGATCTACAGCAGATGCATACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACTGAGGCCTGGCTGCAGATAGTCGAGTGTAGACGAGTGCTGAAATGGACATATGCATATGGGTATTATTTACATGAAGAAGAGCGTGCCAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGGCTTCATCAATGTGCTGAAAAAGAACTACAGCCATTCCTCAGTGCTGATGATGGCCCATCTAGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGCTTGACTAGTGTGACTAAAAACTACTTTGAGAATTTAGTGAGGGCATTAGAGAATGGTCTATCTGATGTGGACAGTGATGGAGCTGCGTTCAGCAAGGCAACGAGCTCAAGAAATGCGGCAGGGAGCAGCAAGGGGAAAGCCGGAAGAGGAAAGGGAACTTTTCGAACCAGCAGCATGTCCAGCAGAACGACTGATGATAGTCATTGGAGTTGCGAGGTTTGTACCTTTGCAAATGTCAAATCTTCCACTGCATGCCAGATTTGCAATCAACCGCGTTGGTGA 1770 0.4469 MDSEDDMHDANDVESFDDDFYSGDAEEAPLDYYSDYDDDADDYFDDSDRIESRCPEHNFTILKESDIQLRQEEDINRVAGVLSISRVAASILLRHYNWSVSKVHDAWFADEEGVRKAVGLLEKPVVEYPNARELTCGICFENYPRARIEVASCGHPYCFSCWEGYITTSINDGPGCLMLRCPDPTCSAAVGQDMIDLLASNEDKQKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYGFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGAWSDHGERTGGFYACNRYEVARQEGVYDDSERRRDMAKNSLERYTHYYERWASNQTSRQKALSDLQQMHTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLHEEERAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADDGPSREFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDSDGAAFSKATSSRNAAGSSKGKAGRGKGTFRTSSMSSRTTDDSHWSCEVCTFANVKSSTACQICNQPRW* 590
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0613 589 Pfam IBR domain, a half RING-finger domain 205 267 IPR002867 -
Lja3g0613 589 Pfam IBR domain, a half RING-finger domain 284 332 IPR002867 -
Lja3g0613 589 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g0613 589 ProSiteProfiles TRIAD supradomain profile. 132 345 IPR044066 -
Lja3g0613 589 SMART zf_4 563 587 IPR001876 -
Lja3g0613 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Lja3g0613 589 SUPERFAMILY RING/U-box 286 334 - -
Lja3g0613 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 536 - -
Lja3g0613 589 SUPERFAMILY Ran binding protein zinc finger-like 561 588 IPR036443 -
Lja3g0613 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 216 IPR013083 -
Lja3g0613 589 ProSiteProfiles Zinc finger RanBP2 type profile. 561 589 IPR001876 -
Lja3g0613 589 SUPERFAMILY RING/U-box 132 217 - -
Lja3g0613 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 536 IPR031127 GO:0004842|GO:0016567
Lja3g0613 589 SUPERFAMILY RING/U-box 206 274 - -
Lja3g0613 589 MobiDBLite consensus disorder prediction 530 562 - -
Lja3g0613 589 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Lja3g0613 589 SMART ibrneu5 205 267 IPR002867 -
Lja3g0613 589 SMART ibrneu5 271 341 IPR002867 -
Lja3g0613 589 CDD RING-HC_RBR_TRIAD1_like 136 186 - -
Lja3g0613 589 Pfam Ariadne domain 354 516 IPR045840 -
Lja3g0613 589 Gene3D - 263 519 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g0613 Lja-Chr3 6050570 6058325 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0613 17 588 ARIADNE family AT1G65430 68.566 0.0 818
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0613 K11968 - gmx:100784195 1063.91
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g2681 3 38387560 38397042 Lja3g0613 3 6050570 6058325 PCT