Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0612 ATGGGAAGCTGTGTATCAACGCAGGGTAAAACAGGGATTCGCAAGAGGTCCAAGGACCTCAACCATCAAAACAGGGCGAAAACAGAGCACCATCAAAACAGGGGAAAAACAGAGCAACATGAACCGGGGACCCCGACGGCGCGTAGGTCGAGTGTGACGGCGCGTGCGGTGACCGTTGTGACAAACCCGAGCCCCGGGAGTATATTTGACAAGTATGAGCTTGGGAAGGAGCTAGGGAGAGGGGAATTTGGCGTGACGCACCGGTGCGTGGACGTGAAAACAGGGGAGGCGTTGGCATGCAAGAAGATATCAAAGACGAAGCTGAGAACGGAGATTGACGTACAGGATGTGAAGAGGGAGGTGCAGATCATGAGGCACTTGCCAAAGCACCCTAACATTGTGGCATTCAGGGAGGCGTTTGAGGACAGAGAGGCTGTGTACCTTGTCATGGAGCTCTGTGAAGGTGGTGAGCTTTTTGATAGGATCGTTGCTAAAGGGCATTATACAGAACGTGCTGCTGCTAATGTTACCAAGACCATACTTGATGTTTGCAAGGTGTGCCATGAACATGGTGTAATACATAGGGACTTAAAACCAGAAAACTTCTTATTTGCAGATGGAAGTGAGACTTCACAATTAAAGGCTATTGATTTTGGCCTTTCCACATTCTATAAGCCTGGTGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCTGAGGTCTTAAGACGTAACTATGGACAAGAAGTTGATATATGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAACTGAAGAAGGGATTGCACAGGCAATAATCCGGGGTAAAGTAGATTTCACAAGAGATCCTTGGCCCAAAGTTTCAGATGAAGCAAAGGACCTAGTAAAGCGTATGCTTGATCCAAGTCCTTATACCCGGATTACAGTTCAAGAAGTACTAGAACATTCCTGGATACAACATAGGGAGCATGGACGAAATATTTCTCTTGGGGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAAGAAAGTTCTCAGAGTGGTGGCTGATATATTGCCGGATGAACAAGTTGATGGGTTTAAGCAAATGTTTGATCTGATGGACAAGGACAAAAATGGAAGCTTAACCTTTGAAGAGCTTCAAGATGGCCTTTCAATGCTTGGACACTCTCTTCCTGATCCTGATGTCCAGATGTTAATGGATGCTGCAGATGTTGATGGAAATGGCACCCTCAATTGTGAAGAGTTCATCATAATGAGTGTTCACCTGAGAAAGATAGGAAGTGATGAGCATCTTTCTGAAGCATTCAGTTACTTTGACAAGAATCAAAGTGGATATGTTGAGTTTGAGGAGTTGAAAGAAGCCTTATCAGATGATGGCGCGGAAGCCTGTGACGATCACGTGGTCAAGGACATTCTAAACGATGTGGACTTGGATAAGGATGGACGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCTTCACGGCAGTATTCAAGAGCAATGTTAAATGCATTAAGTTTCAGGATGTTCAAAGACAACTCTGTAGGAGCAGCTAACTAA 1641 0.4473 MGSCVSTQGKTGIRKRSKDLNHQNRAKTEHHQNRGKTEQHEPGTPTARRSSVTARAVTVVTNPSPGSIFDKYELGKELGRGEFGVTHRCVDVKTGEALACKKISKTKLRTEIDVQDVKREVQIMRHLPKHPNIVAFREAFEDREAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILDVCKVCHEHGVIHRDLKPENFLFADGSETSQLKAIDFGLSTFYKPGERFSEIVGSPYYMAPEVLRRNYGQEVDIWSTGVILYILLCGVPPFWAETEEGIAQAIIRGKVDFTRDPWPKVSDEAKDLVKRMLDPSPYTRITVQEVLEHSWIQHREHGRNISLGDQVRMRIKQFSLMNRFKKKVLRVVADILPDEQVDGFKQMFDLMDKDKNGSLTFEELQDGLSMLGHSLPDPDVQMLMDAADVDGNGTLNCEEFIIMSVHLRKIGSDEHLSEAFSYFDKNQSGYVEFEELKEALSDDGAEACDDHVVKDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRAMLNALSFRMFKDNSVGAAN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0612 546 SUPERFAMILY EF-hand 359 525 IPR011992 -
Lja3g0612 546 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0612 546 Pfam EF-hand domain pair 390 440 IPR002048 GO:0005509
Lja3g0612 546 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 50 527 - -
Lja3g0612 546 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Lja3g0612 546 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Lja3g0612 546 Pfam EF-hand domain pair 448 512 IPR002048 GO:0005509
Lja3g0612 546 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0612 546 SMART efh_1 449 477 IPR002048 GO:0005509
Lja3g0612 546 SMART efh_1 413 441 IPR002048 GO:0005509
Lja3g0612 546 SMART efh_1 377 405 IPR002048 GO:0005509
Lja3g0612 546 SMART efh_1 486 514 IPR002048 GO:0005509
Lja3g0612 546 SUPERFAMILY Protein kinase-like (PK-like) 56 335 IPR011009 -
Lja3g0612 546 MobiDBLite consensus disorder prediction 12 43 - -
Lja3g0612 546 CDD STKc_CAMK 71 329 - -
Lja3g0612 546 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Lja3g0612 546 Gene3D Transferase(Phosphotransferase) domain 1 158 338 - -
Lja3g0612 546 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0612 546 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Lja3g0612 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Lja3g0612 546 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Lja3g0612 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 527 - -
Lja3g0612 546 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Lja3g0612 546 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Lja3g0612 546 Gene3D - 339 514 - -
Lja3g0612 546 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Lja3g0612 546 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Lja3g0612 546 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0612 Lja-Chr3 6043182 6046642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0612 1 540 EF-hand Containing Proteins AT2G31500 65.693 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja3g0612 Pkinase 8.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0612 K13412 - gmx:100818929 894.034