Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0608 ATGTATCCCAAAAGGCCTAGCCAAGATAGCCCTGCTGCTGGGCCGGTGCGCACAAGTGATAGGATCAAGTCGAGGCCAAATGTTTATGGCCGGCCCTTCTTATATTACAACTCAAATCTTAGGCGTTCTAGGAAAACCAAGATCAAGACAAGGACTGCTGCTTCGCAGATTGCTAAGATATTGCGGCCAGGAAATCGGAAAGCACATGATTCAAATAATTCCGGCTCTGTCAAAGGCTCTGCCAACCTTCGGCGCTCAACTAGGAAGAGAAAAGCTAATTTGCATTTTCAAGATTTCACAGACAGCTCTGGAGAGGATGAGGACTTAATGAGACCCACATATCGACAATTGAGAAACCGGATTAACAAGGTCAGTCGGAATGATTTAATGTCTTCTAAGCGCAAAAGAACAGTGGAGACTAATGCAAGACCTCTACGTGAAGGTTTACGACCTCGTCGTTCAAAGGATGCTGCAAGAAAACAAATAATTTTAGAGTCAGATGATGAGCAAAACCTTTCAGAAGACAAGGTTGAACAAGATGAAGCAGAAAATGGAAATGATGTCGAGGAAAATGATGCAGATGATGGTGAAAATGAGGATGAGGGAGATGCTGAGGGTGAAGATGAAGGAGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGATGAAGGAGAGGATGAAGGTGAGGAAGAACAGGATGGAAGAAGGCGCTATGATCTGCGAAATCGTCCTGATGTCCGCAGGTTCTCTATGGATGAAGGGAAGGCCCAGCCAAGATCTCCTAGAAGAGTATTGCATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGAAAGGGTGGATCACGAGTTCATAAGCGTCACCGCTCAGCTAGACTTGAAGATTCTGATGACTCCCTTCTCGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGGCGAGGTGGCAGTAGATCTGGCCCACCTTTTCTTTTTGGGGGCTTGGACACGCATGGAACAACAACATGGGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGCTGATGCTTTGGCTTCTCTAACATCTGGGATTCAAACTGCTGGGCCAAGCTCTAAAGGAGGGGCAGATATTCAACCCTTACAGATTGATGACAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTGTTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGTGTGTTGTTGTGCGGGCCCCCTGGCACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGACAAAAGGTTAGCTTTTACATGCGCAAAGGAGCGGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAGTTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAGCCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAGCAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCCCGTGGACAAGTTGTTTTAATTGGAGCTACCAATAGGATTGATGCCATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAGTTTAACTTTTCCTTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGGCATCCATACTCGTAAGTGGAAGCATCCTCCTTCAAAGGAACTGAAAGGGGAGCTTGCAGCTAGCTGTGTAGGTTATTGTGGTGCGGATCTAAAGGCTCTCTGTACTGAAGCTGCCATCCGTGCTTTCCGTGAAAAATATCCACAGGTTTACACAAGTGATGACAAATTTCTCATAGATGTTGATTCTATCAAGGTAGAAAAGTATCATTTTATTGACGCAATGTCTACAATTACTCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCTTGTCTTCAGAGACATTTAGAGAAAACTATGAGCATCATATCTGATATTTTCCCTCCAGTATCTGTTGCATCAGAGTTGACCAAACTTTCAATGCTTTCATATGGGTCTGCAATTCCACTTGTGTATCGGCCTAGACTTCTACTTTGTGGCGGTGAAGGTACAGGGCTGGATCATCTTGGGCCTGCTGTTTTACATGAACTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCACTTCTGTCAGATCCTAGTGCTAAGACACCGGAGGAGGCATTGGTACATATATTTGGTGAAGCAAGAAGAACAACACCATCAATTCTCTATATATCGCAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCTTGACTCTTTTAGATGAATTGCCATCTGACTTACCTATCCTACTACTTGGGACAACCTCAGTTACACTTGTGGAAGTTGACGAAGTGCCCACTTCAGTCTTCCCTCATCGCTCAGTTTATCAAGTGAACTTGCCATCTACTGAAGATAGGACTTTATTTTTCGATCGTTTAATAGAAGCTGCCATGTCAGTACTGTTAGAGGGAATCAGCAAGAAATCCCAAGATACAAGATGCCATTCTGAACTTCCGAAGGCTCCAAAATTGGTGAGTGGTCCAAAGGTGTCCGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGTCTTAGGGATATTTGCAACCGGATATTATATGACAAACGATTTAATGCGTTCCATTTTCCAGTGTCTGATGAAGATGCACCTAATTATCGCTCAATCATACAGAACCCAATGGACATGGCTACTGTCTTGCAACATGTTGATAATGGCCACTATATCACATGTGCTGCATTCCTGCAGGACATTGATCTTATTGTTTCCAATGCAAAGACTTACAATGGAGAGGACTACAATGGTGCTAGGATTGTTAGTAGAGCTTGTGAACTCCGTGATGCGGTGCAGGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCATACTGTGACAAGATTGCTAGCGAAGGTGGTCCAGTTCATTTGCCTGATGAGTTAAGAGATTCTACATTTCCTGTTACTCCTGTGGTTCAACTAGGTACTGCTACTACCAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACATGGATAAGAGTTATGAAGCACTGAAGCGGACTAAGAAGACAAGCGATTTTCCTGCAGCAGAAGACAAATCACAGGAAGAGTCAATACCATCAAAGTCCTCCCAGGAGCATCAGACAAGTGACATGGATTCTGAACGGCCGGAACCTGTAACCATTGATGGAAATTCAAACGGAACTGGAACAAATAGCTTTGCTGATGATAGCAGCCTTAATGATGTCACAATGCTTGATGATGAATTTTCAAGCCAAGTGGAGTCCGTCAAGCAGCATTTTGTTAAGCGCAGTGAAAATTACAGCCTTCCACAGCTTGAAAGGATTTACACGAGAATCATGAAGGGTGTATTCGAAACCAAAGAAAAAGGAATGAATGATGATGATATTAAAACTTCAGTTGTGAGGTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA 3636 0.4387 MYPKRPSQDSPAAGPVRTSDRIKSRPNVYGRPFLYYNSNLRRSRKTKIKTRTAASQIAKILRPGNRKAHDSNNSGSVKGSANLRRSTRKRKANLHFQDFTDSSGEDEDLMRPTYRQLRNRINKVSRNDLMSSKRKRTVETNARPLREGLRPRRSKDAARKQIILESDDEQNLSEDKVEQDEAENGNDVEENDADDGENEDEGDAEGEDEGEDEGDEDGDDEEGEDEGEDEGEEEQDGRRRYDLRNRPDVRRFSMDEGKAQPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRSARLEDSDDSLLVDELDQGPAIPWGRGGSRSGPPFLFGGLDTHGTTTWGLNLAASGWGHQADALASLTSGIQTAGPSSKGGADIQPLQIDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFSLPGCEARAEILGIHTRKWKHPPSKELKGELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSIKVEKYHFIDAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKTMSIISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYISQFDVWWETAHEQLRAVLLTLLDELPSDLPILLLGTTSVTLVEVDEVPTSVFPHRSVYQVNLPSTEDRTLFFDRLIEAAMSVLLEGISKKSQDTRCHSELPKAPKLVSGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHFPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITCAAFLQDIDLIVSNAKTYNGEDYNGARIVSRACELRDAVQGMLSQMDPALVAYCDKIASEGGPVHLPDELRDSTFPVTPVVQLGTATTRMSARLRHVQPEVNMDKSYEALKRTKKTSDFPAAEDKSQEESIPSKSSQEHQTSDMDSERPEPVTIDGNSNGTGTNSFADDSSLNDVTMLDDEFSSQVESVKQHFVKRSENYSLPQLERIYTRIMKGVFETKEKGMNDDDIKTSVVRFLLKFVEDDANF* 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0608 1211 SMART bromo_6 905 1012 IPR001487 GO:0005515
Lja3g0608 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 709 923 IPR027417 -
Lja3g0608 1211 CDD AAA 421 560 - -
Lja3g0608 1211 Gene3D - 897 1025 IPR036427 GO:0005515
Lja3g0608 1211 Gene3D - 383 653 IPR027417 -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 233 263 - -
Lja3g0608 1211 Pfam ATPase family associated with various cellular activities (AAA) 425 559 IPR003959 GO:0005524|GO:0016887
Lja3g0608 1211 PANTHER BNAC08G44480D PROTEIN 1 1206 - -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 171 232 - -
Lja3g0608 1211 CDD Bromo_AAA 905 1015 - -
Lja3g0608 1211 SUPERFAMILY Bromodomain 903 1017 IPR036427 GO:0005515
Lja3g0608 1211 SMART AAA_5 421 562 IPR003593 -
Lja3g0608 1211 CDD AAA 705 817 - -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 1116 1135 - -
Lja3g0608 1211 Pfam Bromodomain 915 986 IPR001487 GO:0005515
Lja3g0608 1211 Gene3D - 561 646 - -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 60 295 - -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 127 170 - -
Lja3g0608 1211 PRINTS Bromodomain signature 953 971 IPR001487 GO:0005515
Lja3g0608 1211 PRINTS Bromodomain signature 937 953 IPR001487 GO:0005515
Lja3g0608 1211 PRINTS Bromodomain signature 971 990 IPR001487 GO:0005515
Lja3g0608 1211 ProSitePatterns AAA-protein family signature. 530 548 IPR003960 GO:0005524|GO:0016887
Lja3g0608 1211 MobiDBLite consensus disorder prediction 1078 1135 - -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 92 114 - -
Lja3g0608 1211 ProSiteProfiles Bromodomain profile. 928 990 IPR001487 GO:0005515
Lja3g0608 1211 MobiDBLite consensus disorder prediction 1078 1096 - -
Lja3g0608 1211 PANTHER AAA DOMAIN-CONTAINING 1 1206 IPR045199 -
Lja3g0608 1211 MobiDBLite consensus disorder prediction 67 82 - -
Lja3g0608 1211 Pfam AAA+ lid domain 588 624 IPR041569 -
Lja3g0608 1211 Gene3D - 694 855 IPR027417 -
Lja3g0608 1211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 650 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0608 Lja-Chr3 6008256 6014674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0608 371 625 Calmodulin-binding Proteins AT3G56690 36.680 2.52e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0608 K22531 - gmx:100787765 1910.19