Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0604 ATGGGACACAGTTCCAAGAAGAAGAAGCGCGGAGGAGGCGGAGGCAGTGGTCGCCGGAGCAAGGGAAGAACACCTTCCAAAGACCACGCTTCTCCCTTCGCCGCCGATGATAACGAGCAACTCGCCGAGGAGATTACTGCATTATGTGCAATTTTCGAAGAGGATTGCAAAATTGTTCCCGGTTCGCATCCTCAAATAGTTGTCAAGATCAGGCCTTACTCCAAGGACATGGGCTATGAGGATTTAGATGTTTCTGCTGTTCTTGTTGTTAGGTGCTTGCCAGGGTATCCCTATAAATCTCCCAAGTTGCAGATTACTCCTGAGAATGACTTATCAGAAGCTGATGCTAATAGACTCCTGTCACTCCTTAACGATCAGGCTAATTTAAATGCTAGGGAGGGACGAGTAATGATCTTTAATTTGGTTGAGGCTGCTCAAGAATTTCTGTCTGGAATTGAGCCAATTGCCAAGTCAACTGAATCTAAGCATTTACACTCAACTACGGAAAGCAATGAAGAATTGTTTCTCAAGGATATCGCATCTTCAAATAAGAATAGGTCTTTTGTTTATGGCTTCATTGACCTTTTCAGTGGCTATGGAGAGTCATGGACTTGGGGTTTTGGAATAGGTGAAACTTCTGGAAAAAGTTCTTCCCTTCCTCCCTCCAAGTTAGATGCCTCAAAACCACGTTTTGAGGTTCAGGAAAAGAAATCCAATAGTAAGGAAAAACTATACACAATGCCAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGTTAGTGAAGATGACAACACTAGCTTATCTTTGACTCATTCAAGCAAATCTCTGGTGGAGGATTATGCAGGGAGCGACAGTGAAGGTGAGAAAGAGTATTTTATTGGCGATGAGTATACAACAGAGGATAACGAAGATATGTATGGAAGTGAGTCTTCAGAATCTGTGTCTTCTGCCTCCCCTCGTCTGCAAGCATCTCAAACAGTAGAAAAGGATCTAATAATGGTTCACATCCTTCGTCTTGTTTGTGCTTCAAATGGAACATTGGCTGACTCTTTGCCACAATTAGCAACAGAGATGTACAATTTAGGGATCTTTTCTAGTTCGGCACGTGAGATGGCATCTAAGCCGCCTTCCCTTTTTAACAAATCCTTTGATCGTGTCGTCCAGAAACACCTGGCATCATCCGGAATATCACAATTTTGGAAACCATCTGATCTTGGAGGCTCTAATAGGACTCCCCATAGTTCTCGATATTTGAATGATTTTGAGGAGCTACAACCTCTTGGTCATGGTGGTTTTGGTCGTGTTTTGCTGTGCAAAAATAAACTCGACGGAAGGCAGTATGCGGTAAAGAAAATTCGCCTTAAAGACAAAAGCATGCGTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTGCAGACTCTGATGGTGACCTTTCCTGGGGTTCATCGACTCCAGTGAGCTCTACTTTTAGCTATAAAGCTGCAAGCTCCAATAATGCCACCGGGCATGAAAATCAGCAGGAATCAACGTACCTCTACATACAAATGGAGTACTGTCCCAGGACACTTCGCCAGGTGTTTGAATCATATAATTTTGACAAAGAACTGGCATGGCATTTGTTTCGCCAAATAGTGGAAGGATTGGCACACATACATGGACAAGGAATAATTCATCGGGACTTAACACCAAGTAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAGGATCTAGGTCATGTGGCTGATACTGGAGTTTCCGTTGATGGTACTGGCCAAGTTGGAACATATTTCTACACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGGGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACATGTTGTTTTATCTGATCTGAAACAAAAAGGGGAACTTCCACCTACTTGGGTTGCTGAGTTTCCAGAACAGGAATCCTTATTGAGGCGGTTAATGTCTCCAGGTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTCCGGAATGCATTTCCCCCACGGATGGAGTCTGAATTATTGGATGATATCCTACGAACAATGCAGAAATCAGAGGATACAAGCATTTACGACAAAGTTTTAAATGCTATTTTTGATGAAGAGATGTTAAGCACAAAACACATTCGTCCGATTGGTAGATTGAGCTCAGTTGGAGATAACAGTTCATCCCTTCAGTATGCAGATTTTGTAACTGAGGTTCGGGATTATGTTGTAGACATCCACAGGGAAATTTTCAGACAGCATTGTGCAAGGCATCTAGAAATATCAACAATGCGATTATTGGATGATTGCCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGACATGCTTGAACTTTGCCATGAACTGCGTTTGCCTTTTGTGAACTGGATTATATCCAACCAGAAATCTTCATTCAAACGATATGAGATATCATGTGTTTACAGAAGAGCAGTTGGACACTCAGCACCAAACCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGTGCCTCAGCTTTGACAGAGGCAGAGGTCATTAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATGCAGACTTATGTGACATTCATCTAAACCATGCTGACCTCCTGGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACACAGACTTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCACAATCCTCAGAAAGGAAATCAAAATGGGTAGTTATAAGGCGGCAGCTTTTGCAGGAACTGGATTTGGCAGAAGCTACAGTAAATAGGTTGCAGACAGTAGGTTTAAGATTCTGTGGTTCTGCTGATCAGGCTCTTCCCAGACTAAGAGGAGCTCTTCCATCTGATAAGCGTACATTGAAGGCCCTTGATGAGTTGTCTGAGCTTGTCAGTCTCTTGAGAATTTGGAGGATTGATAAAAATGTCTATATAGATGCATTAATGCCACCAACTGAAAGTTATCATAGAGATATGTTTTTTCAGGTATACTTAAGGAAGGAAAACAATCCCGGATCACTCACTGAAGGTGTCTTGCTGGCTGTTGGTGGCCGATATGACTATTTGCTTCATCAGTTGTGGAATAATGACTATAAAGGGAATCCTCCAACTGGTGTGGGGACTAGTCTTGCACTAGAGACAATAATTCAGAACTGTCCAGTAGATTTTCGGCCCAATAGAAATGAAGCCAGCACCAATATTCTTGTCTGTTCAAAAGGAGGAGGCGGTCTGTTGGAGGAGCGCATGGAACTAGTTGCTGAATTATGGGAGGAGAACTTCAAGGCTGAATTTGTGCCCACCCATGATCCTAGTCTTACGGAGCAGTATGAGTATGCTAATGAACACGATATCAAGTGTCTTGTCATTATGACGGATACCGGTTTCTCTCTGACAGATTCTGTTAAGGTTCGACACCTTGAACTTAAGAAGGAGAAAAGTATCGAGAGAAAAAACCTTGTCAAGTTTCTATCGGATGCTATGGCAACACAATTTAGAAACCCCTCCATCTGGATTTGA 3705 0.4265 MGHSSKKKKRGGGGGSGRRSKGRTPSKDHASPFAADDNEQLAEEITALCAIFEEDCKIVPGSHPQIVVKIRPYSKDMGYEDLDVSAVLVVRCLPGYPYKSPKLQITPENDLSEADANRLLSLLNDQANLNAREGRVMIFNLVEAAQEFLSGIEPIAKSTESKHLHSTTESNEELFLKDIASSNKNRSFVYGFIDLFSGYGESWTWGFGIGETSGKSSSLPPSKLDASKPRFEVQEKKSNSKEKLYTMPELPAKLDTVGEVSEDDNTSLSLTHSSKSLVEDYAGSDSEGEKEYFIGDEYTTEDNEDMYGSESSESVSSASPRLQASQTVEKDLIMVHILRLVCASNGTLADSLPQLATEMYNLGIFSSSAREMASKPPSLFNKSFDRVVQKHLASSGISQFWKPSDLGGSNRTPHSSRYLNDFEELQPLGHGGFGRVLLCKNKLDGRQYAVKKIRLKDKSMRDRILREVATLSRLQHQHVVRYYQAWFETGVADSDGDLSWGSSTPVSSTFSYKAASSNNATGHENQQESTYLYIQMEYCPRTLRQVFESYNFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHVADTGVSVDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGELPPTWVAEFPEQESLLRRLMSPGPSDRPSATELLRNAFPPRMESELLDDILRTMQKSEDTSIYDKVLNAIFDEEMLSTKHIRPIGRLSSVGDNSSSLQYADFVTEVRDYVVDIHREIFRQHCARHLEISTMRLLDDCPQFNRNAVKLLTHGGDMLELCHELRLPFVNWIISNQKSSFKRYEISCVYRRAVGHSAPNRYLQGDFDIIGGASALTEAEVIKVTRDIVTCFFHADLCDIHLNHADLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELDLAEATVNRLQTVGLRFCGSADQALPRLRGALPSDKRTLKALDELSELVSLLRIWRIDKNVYIDALMPPTESYHRDMFFQVYLRKENNPGSLTEGVLLAVGGRYDYLLHQLWNNDYKGNPPTGVGTSLALETIIQNCPVDFRPNRNEASTNILVCSKGGGGLLEERMELVAELWEENFKAEFVPTHDPSLTEQYEYANEHDIKCLVIMTDTGFSLTDSVKVRHLELKKEKSIERKNLVKFLSDAMATQFRNPSIWI* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0604 1234 Pfam RWD domain 39 149 IPR006575 GO:0005515
Lja3g0604 1234 MobiDBLite consensus disorder prediction 213 241 - -
Lja3g0604 1234 MobiDBLite consensus disorder prediction 1 37 - -
Lja3g0604 1234 ProSitePatterns Protein kinases ATP-binding region signature. 428 452 IPR017441 GO:0005524
Lja3g0604 1234 ProSiteProfiles Protein kinase domain profile. 422 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0604 1234 Gene3D Ubiquitin Conjugating Enzyme 30 190 IPR016135 -
Lja3g0604 1234 SUPERFAMILY Protein kinase-like (PK-like) 418 736 IPR011009 -
Lja3g0604 1234 PANTHER EIF-2-ALPHA KINASE GCN2 24 1234 - -
Lja3g0604 1234 Gene3D Phosphorylase Kinase; domain 1 410 538 - -
Lja3g0604 1234 SUPERFAMILY UBC-like 37 149 IPR016135 -
Lja3g0604 1234 SUPERFAMILY Class II aaRS ABD-related 1130 1224 - -
Lja3g0604 1234 Pfam Histidyl-tRNA synthetase 868 1111 IPR041715 -
Lja3g0604 1234 ProSitePatterns Tyrosine protein kinases specific active-site signature. 576 588 IPR008266 GO:0004672|GO:0006468
Lja3g0604 1234 Coils Coil 971 991 - -
Lja3g0604 1234 SUPERFAMILY Class II aaRS and biotin synthetases 789 1113 IPR045864 -
Lja3g0604 1234 ProSiteProfiles RWD domain profile. 43 152 IPR006575 GO:0005515
Lja3g0604 1234 PANTHER HISTIDYL-TRNA SYNTHETASE 24 1234 - -
Lja3g0604 1234 Pfam Protein kinase domain 422 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0604 1234 MobiDBLite consensus disorder prediction 300 321 - -
Lja3g0604 1234 CDD STKc_EIF2AK4_GCN2_rpt2 415 719 - -
Lja3g0604 1234 Gene3D - 1125 1224 IPR036621 -
Lja3g0604 1234 MobiDBLite consensus disorder prediction 1 16 - -
Lja3g0604 1234 SMART RWD2001b 43 152 IPR006575 GO:0005515
Lja3g0604 1234 Gene3D Transferase(Phosphotransferase) domain 1 540 731 - -
Lja3g0604 1234 Gene3D Bira Bifunctional Protein; Domain 2 783 1117 IPR045864 -
Lja3g0604 1234 Pfam Anticodon binding domain of tRNAs 1129 1226 IPR024435 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0604 Lja-Chr3 5964059 5981076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0604 409 721 Miscellaneous Gene Families AT1G29230 26.791 2.56e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Lja3g0604 Pkinase 8.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0604 K16196 - gmx:100797996 2056.95