Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0602 ATGGAGTTTGCGGTTGATGGCTCTATCAATGGCGAGACATCCGGAAATGCTGCTATTGGTGAGGTCAGCAGTATAGCTGATGAAAACAGAGCTGGAGGAAGTTCTGCTGAACCTTACAAACAAGATCAAGATGATAATGTGACTCGAGATTCTTCTGGAGGAGAAACTATACCATCAGCAGTTCCTGCCGTATCACTTGCATCTGTTGATGAGCCCTATGTGGGTCTGGAGTTTGATTCGGAAGCAGCAGCACATGCATTTTATAATGCATATGCCACTCAAGTTGGATTCATCATACGCGTAAGTAAACTCTCACGATCAAGGCGTGATGGAACTGTTATTGGACGGGCTCTAGTTTGCAACAAAGAGGGTTACAGAATGCCTGACAAGCGTGAAAAGATTGTAAGGCAAAGGGCAGAGACAAGGGTTGGTTGCAGGGCAATGATCTTGGTGAGGAAAGTTAGTTCTGGTAAATGGGTTGTTACAAAGTTTGTAAAGGAGCACACACATCCTCTGAGTCCTGGAAAAGGTAGAAGGGATTGCGTATATGAACAATATCCGAATGAGCACGATAAAATTCGGGAACTTTCTCAGCAGTTGGCAATAGAGAAGAAGCGTTCTGCAACTTATAAAAGACATCTTGAATTGATATTTGATTACATTGATGAGCACAATGAGAGCCTTTCAAAGAAAATACAGCACATTGTAGACAGTGTGAAGGACATGGAAACCAAAGAAGAGTAG 744 0.4288 MEFAVDGSINGETSGNAAIGEVSSIADENRAGGSSAEPYKQDQDDNVTRDSSGGETIPSAVPAVSLASVDEPYVGLEFDSEAAAHAFYNAYATQVGFIIRVSKLSRSRRDGTVIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLSPGKGRRDCVYEQYPNEHDKIRELSQQLAIEKKRSATYKRHLELIFDYIDEHNESLSKKIQHIVDSVKDMETKEE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0602 247 Pfam FAR1 DNA-binding domain 87 173 IPR004330 -
Lja3g0602 247 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 1 246 - -
Lja3g0602 247 MobiDBLite consensus disorder prediction 1 58 - -
Lja3g0602 247 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0602 Lja-Chr3 5926065 5929959 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g0602 FAR1 1.4e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0602 - - gmx:100806900 414.461