Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0595 ATGGCTGACACAACCCCCATTTACCCTGCCTTCTTCAGAATCTTCCTTTCAGAGCTCCACCCTGAAAGAATGGAAGTTCCACCAGAATTTCTGAAGTATTTGGAAGAAGACTTTTCAACAAATGTGATTCTTATAGGTTCATCCGGTTACCGGTGGCAAGTGACCATTTTCAAGGATGAGAAGGTATATATGCAAAATGGTTGGCCACAGGTTCTTGCAGACAACTCAGTGAAGTCGCAGGACTTGTTGCTTTTTACATATAATGGACAGAACCGATTCCTAGTGCAATTTTTCAGTAGCAATGGATGTGAGAGACAATGCACTAAAAAAATAAAACATGAAGAAGCTGCCACCCCAATCTTGGAGCAGAAAAGAAAGAGGGGAAGACCAAGAAAAGAAAAGGGACTCCCAACCAATTTCGTCAACCAGATGAAAGAATGCCATATCAGCAAAGAATGTAAAAGGAACTCCCAACCAGCAAATAAGTATCCTGACTTCTTCAAAGTTTTCCTCCCGAAACAACACTCTGAAAGAATGCTTATACCAAACGCTTTCATGATGTTGGCACCCCAACAAGGATGGGAACCCAGGGATCTCATCCTTAAGAATCTTCATGGGAAAGTTTGGGAAGTCAAAGCACTTCCAATCAACAGTCAAATGTATTTTGATGATGGATGGATGCAGTTTCGAGAAGATAATTGTTTAAAGGCTGCGGACTTTGTCTTTTTTACACATGTTGGAGGTAATGTGTTTAACTTTAAGATCTGTGAATCAACAGGGTGTGAAAAGACTAAGGTAAATGTTAGTGGAGAACAAGAAAAGGAAAGGGATGATGTGATAGAGCTGGATGAGGAAGAAAAGGAAAGGGATGATGTGATAGTGCTGGATGAGGAGGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGAGGATGAAGATGAGGAGGAGGGGGAGGAAGAAGAAGAAGAAGAAGAATGCAAAGCAACCATGAGGAGAAAATCTCCTGGTAAAGCCTGCAAAGTCAACTTGAGCAGGGAGAAGGGAGGCAGTTCTGGGACCAAAGCTGAAGATGCAGATATTGATGTAGAAATGTATATTCAGCCGGATAATCCCTACTTCATTAATAAACCATGGAAAACCAAACCCAACGATCTGCATATTCCATATACAATCCTCAAGGACTTCTCCCCTAGGTTTGGAAAAAAAATCACCCTTGTATGTTGCCAGTGCCAGAATACTCAAAGAAATGAACTGCAAAACTACCATCTCAGCTTGCATCAACAACAGACACCCATCAATAGATTTCGCACAGAAAAGGGAGAAGTAACTAGGTGGAAAGATGGGCGAGTGTGTGTCAAAGGATGGTTATCTTTTCGCAGAAAGAACAAGATCAAAGAAAATGATGCATGCATCTGTGAAATTGTGTGGCAGGAAGATCAAGAAATAGAAATGATACGGGTCCATGTAGCTAAGAAGAAAGTATCAAATTAG 1500 0.4093 MADTTPIYPAFFRIFLSELHPERMEVPPEFLKYLEEDFSTNVILIGSSGYRWQVTIFKDEKVYMQNGWPQVLADNSVKSQDLLLFTYNGQNRFLVQFFSSNGCERQCTKKIKHEEAATPILEQKRKRGRPRKEKGLPTNFVNQMKECHISKECKRNSQPANKYPDFFKVFLPKQHSERMLIPNAFMMLAPQQGWEPRDLILKNLHGKVWEVKALPINSQMYFDDGWMQFREDNCLKAADFVFFTHVGGNVFNFKICESTGCEKTKVNVSGEQEKERDDVIELDEEEKERDDVIVLDEEEEEEDDDDDDDDDDEDEDEEEGEEEEEEEECKATMRRKSPGKACKVNLSREKGGSSGTKAEDADIDVEMYIQPDNPYFINKPWKTKPNDLHIPYTILKDFSPRFGKKITLVCCQCQNTQRNELQNYHLSLHQQQTPINRFRTEKGEVTRWKDGRVCVKGWLSFRRKNKIKENDACICEIVWQEDQEIEMIRVHVAKKKVSN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0595 499 Gene3D - 6 103 IPR015300 -
Lja3g0595 499 Gene3D - 157 261 IPR015300 -
Lja3g0595 499 Coils Coil 315 335 - -
Lja3g0595 499 SUPERFAMILY DNA-binding pseudobarrel domain 161 261 IPR015300 -
Lja3g0595 499 PANTHER B3 DOMAIN-CONTAINING 158 492 - -
Lja3g0595 499 PANTHER B3 DOMAIN-CONTAINING 8 146 - -
Lja3g0595 499 SMART B3_2 166 259 IPR003340 GO:0003677
Lja3g0595 499 SMART B3_2 11 101 IPR003340 GO:0003677
Lja3g0595 499 MobiDBLite consensus disorder prediction 277 327 - -
Lja3g0595 499 Coils Coil 282 302 - -
Lja3g0595 499 MobiDBLite consensus disorder prediction 264 335 - -
Lja3g0595 499 CDD B3_DNA 164 256 IPR003340 GO:0003677
Lja3g0595 499 Pfam B3 DNA binding domain 17 100 IPR003340 GO:0003677
Lja3g0595 499 Pfam B3 DNA binding domain 166 258 IPR003340 GO:0003677
Lja3g0595 499 SUPERFAMILY DNA-binding pseudobarrel domain 8 103 IPR015300 -
Lja3g0595 499 ProSiteProfiles B3 DNA-binding domain profile. 164 259 IPR003340 GO:0003677
Lja3g0595 499 Gene3D - 325 496 IPR015300 -
Lja3g0595 499 SUPERFAMILY DNA-binding pseudobarrel domain 444 481 IPR015300 -
Lja3g0595 499 CDD B3_DNA 9 99 IPR003340 GO:0003677
Lja3g0595 499 ProSiteProfiles B3 DNA-binding domain profile. 9 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0595 Lja-Chr3 5830747 5838860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0595 164 499 B3 DNA Binding Superfamily AT3G06160 22.485 1.82e-21 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g0595 B3 3.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0595 - - lja:Lj3g3v3315950.1 716.457