Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0594 ATGCCGCCTCCGGCGAAATCAACCCCGAGGCCGCCTTCTCAGGAAGGCGGTGAAGACTCGTCGGTGTCGCCGTCGAACAACCTCTGGGTGGGGAATCTGGCGCCGGACGTGACCGACTCCGATCTGATGGATCTCTTCGCGCAGTACGGCGCCCTCGATAGCGTCACCTGTTATACTTCTCGCAGCTACGCCTTCGTCTTCTTCAAGCGCGTCGATGATGCCAAAGCCGCCAAAAACGCCCTTCAAGGCTTCTCCCTCCGCGGCGTTTCATTGAAGATTGAATTTGCATTTCCGGCAAAGCCATGTAAGCAGCTTTGGGTTGGTGGCATTAGCCCAGCTGTTACAAGGGAAGACTTGGAAGCTGAATTTCATAAATTTGGTAAACTTGAGGACTTCAAGTTCTTCAGAGACCGTAACACAGCATGTGTTGAATTTTTCAATTTGGATGATGCAACTCAGGCAATGAAAATCATGAATGGGAAACGAATAGGCGGGGAGCAAATTCGTGTTGACTTCCTCCGGTCGAATTCTACAAAAAGGGACCAATTGCCTGATTATGGTCAGTTTCAAGGAAAAAGCATGGGGCCTACTGATTCCTATTCTGGACAGAAAAGACCACTGCATTCACCGCCATTAATGGGAAGGAAGGGCGATCATATACCGAGTAATATTTTGTGGATTGGTTATCCCCCTGCTGTTCAGATTGACGAGCAAATGCTTCATAATGCAATGATCTTGTTTGGTGAAATTGAGAGGATCAGGAGCTTTCCTTCAAAGAACCATGCATTGGTTGAATTTAGAAGCGTCGATGAAGCTCGGCGTGCAAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATTACAATTACGTATTCGAGCAGTGACCCGGTACCTGGCAAAGATTACCCTACCTTTTATCCTGGAAGTAATGGGCCAAGACCTGACATGTTCTTGAATGAGCATCCGTTTCAACCTTTTCAAATGGATTTAATTGGTCATAATCGTCCAATGGTTCCAAATAGTTTTCCTGGCCAGTTGCCACACAGTGGTATTGTTGGCCCTAACATACCAATGCGTCCTTTTGGTGCTCAAGGTGGTCTTGATTCTGGTGTTTCAGGCCCCGAGTTTAATGATATTAGCTCTCTCCACCAATTTCAGGATGGTAGCTCCATGAGTAAGATAGGACCAAACTGGAAAAGGCCATCTCCTCCAGCACAAGGGATTCTTCCTTCTCCTACACCGGGTGTTAGGCTTCCTACAAGATCAGCCTCTGGTGCATGGGATGTACTGGACATAAATCATATTCCAAGAGATCCTAAACGGTCTAGGATAGATGGTACTCCTTTAAGGAATATAGATGATCGTGGGTTTGCTCTAGAACAACAATATGGGAACAATCCAGTTATTGATGGAGGTGGTTCTGATCCCTATATGAACATGCAAGGAAAGAGTCACATTGGTCCAGTGAGTACAAGGATCACAGCTGGAGTACATGGTTCTGGCCAGCCTGATATTGATCACATATGGCGCGGAGTTCTTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTGTTGGGAAAGGGATTGGGGCTGAGCTTCCTGATGTTGTTGATTGCTCAGCTAGGACAGGATTGGATATACTTTCAAAGCACTATGCTGATGCAATTGGTTTCGAAATTGTTTTCTTTCTACCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGCTACCTTAAAGCCAAAAATCGTGCTGGTGTTGCCAAGTTTGCCGATAACAACACCTTATTCTTGGTACCTCCTTCTGATTTTCTTACAGATATTTTGAAAGTCACTGGGCCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCATCATTGCCAAATAGCACACCCATGCAAGAATCATCGCATTTGCCAATACCGTCAACTCAGTATATGCAGCAGATTCCTCCTTCGCAGGCTGAATATGGTATGATTCCTTCAAAGGAGGAACGGTTTTTGCAAGCGGATTACAACAGGTCGCTGCATGACGACTCTAAGCTTTCTGCTAAACCAATAGCTACAGGTGGGCCCCCTCCTGTTCAGTCTATGCCTTCAGAATATGCTCCTAATACTACTGTTTCTGGGTCCCAAGCTGCAGTTGGATTAACACCTGAGCTTATTGCAACTTTAGCTTCGTTTCTTCCTGCAAATGCACAATCATCTGCCCCTGATGGTGCAAATCCAGCAGGAGGCTCCTTGAATGTGAAGCCTCCATTTCCTCCTTCGGCACCTAATGATGGAAACCAATCTCATTTGTGGAAACAGGATCATCAAATTGCAGATCAATCCATTTATCCTCCTCCACAGTTCAGGAGTATGTATAACTTTAACAATGGTCATTATCAGTCTTATCCACCAGCACCGGCTCCTGGTCACCCTGCTCAACTGGTCTCTGGCAGTTCTCATATACAAGACTCTGCTGTCGGCATGCAGCAGCCAGGTGCTGTTTCATCAACATACATGTCTAATTTTGCGACACCTAGTCATAATGGACAGTCAGCTGTATCCTCCCATGTCAATCAGCAGTATCAGGTCGACGCCTCCCCCAGTACTCAGAGAGGCTTTGGAGTGGCGCAGGGAACTGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAGCAATTCTCAGGCTTTCCAGCCACCTAATAATTCTATGTCCTATTCTAATCAAGTTAACAGTGCTAATCCTTCACAGCAACCAACTGGCATTCCATATGCAGTGGGTCAAATAAACTCGGATGCACCCAATCAGCAACTTCCTGTCTTTGGAGCTGGTCAAGGTACTTCAGAAGTGGAGGCTGATAAGAACCAGAGATATCAGTCAACACTGCAGTTTGCTGCCAATCTTCTCTTGCAAATACAGCAGCAGCAGCAAACCCAAGGAGGAAATGGACCTGGAGTTCAACAGTGA 2988 0.4612 MPPPAKSTPRPPSQEGGEDSSVSPSNNLWVGNLAPDVTDSDLMDLFAQYGALDSVTCYTSRSYAFVFFKRVDDAKAAKNALQGFSLRGVSLKIEFAFPAKPCKQLWVGGISPAVTREDLEAEFHKFGKLEDFKFFRDRNTACVEFFNLDDATQAMKIMNGKRIGGEQIRVDFLRSNSTKRDQLPDYGQFQGKSMGPTDSYSGQKRPLHSPPLMGRKGDHIPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIRSFPSKNHALVEFRSVDEARRAKEGLQGRLFNDPRITITYSSSDPVPGKDYPTFYPGSNGPRPDMFLNEHPFQPFQMDLIGHNRPMVPNSFPGQLPHSGIVGPNIPMRPFGAQGGLDSGVSGPEFNDISSLHQFQDGSSMSKIGPNWKRPSPPAQGILPSPTPGVRLPTRSASGAWDVLDINHIPRDPKRSRIDGTPLRNIDDRGFALEQQYGNNPVIDGGGSDPYMNMQGKSHIGPVSTRITAGVHGSGQPDIDHIWRGVLAKGGTPVCRARCVPVGKGIGAELPDVVDCSARTGLDILSKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFADNNTLFLVPPSDFLTDILKVTGPERLYGVVLKFPSLPNSTPMQESSHLPIPSTQYMQQIPPSQAEYGMIPSKEERFLQADYNRSLHDDSKLSAKPIATGGPPPVQSMPSEYAPNTTVSGSQAAVGLTPELIATLASFLPANAQSSAPDGANPAGGSLNVKPPFPPSAPNDGNQSHLWKQDHQIADQSIYPPPQFRSMYNFNNGHYQSYPPAPAPGHPAQLVSGSSHIQDSAVGMQQPGAVSSTYMSNFATPSHNGQSAVSSHVNQQYQVDASPSTQRGFGVAQGTDASVLYNSQAFQQPNSNSQAFQPPNNSMSYSNQVNSANPSQQPTGIPYAVGQINSDAPNQQLPVFGAGQGTSEVEADKNQRYQSTLQFAANLLLQIQQQQQTQGGNGPGVQQ* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0594 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Lja3g0594 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 88 IPR000504 GO:0003723
Lja3g0594 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Lja3g0594 995 Gene3D - 102 207 IPR012677 -
Lja3g0594 995 MobiDBLite consensus disorder prediction 179 209 - -
Lja3g0594 995 Pfam SPOC domain 506 622 IPR012921 -
Lja3g0594 995 SUPERFAMILY RNA-binding domain, RBD 214 298 IPR035979 GO:0003676
Lja3g0594 995 Gene3D - 3 101 IPR012677 -
Lja3g0594 995 Gene3D - 217 305 IPR012677 -
Lja3g0594 995 MobiDBLite consensus disorder prediction 741 773 - -
Lja3g0594 995 SUPERFAMILY RNA-binding domain, RBD 100 199 IPR035979 GO:0003676
Lja3g0594 995 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 995 - -
Lja3g0594 995 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 2 995 - -
Lja3g0594 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Lja3g0594 995 CDD RRM3_Spen 105 174 - -
Lja3g0594 995 SUPERFAMILY RNA-binding domain, RBD 6 100 IPR035979 GO:0003676
Lja3g0594 995 SMART rrm1_1 104 171 IPR000504 GO:0003723
Lja3g0594 995 SMART rrm1_1 224 292 IPR000504 GO:0003723
Lja3g0594 995 SMART rrm1_1 27 94 IPR000504 GO:0003723
Lja3g0594 995 MobiDBLite consensus disorder prediction 1 26 - -
Lja3g0594 995 CDD RRM3_Spen 225 294 - -
Lja3g0594 995 CDD RRM3_Spen 28 97 - -
Lja3g0594 995 MobiDBLite consensus disorder prediction 897 962 - -
Lja3g0594 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
Lja3g0594 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0594 Lja-Chr3 5818699 5829122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0594 12 286 Eukaryotic Initiation Factors Gene Family AT4G34110 24.333 1.18e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0594 - - gmx:100777570 1569.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4974 3 91925742 91929323 Lja3g0594 3 5818699 5829122 PCT