Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0589 ATGACGACGAGGGTGGAGTTTTGCAGCGGCAGTACGCGGCCTTCGCAGAGACTGCAGAGTAGTTCAGGTCATTTGATTTGTAGAATAGAGAGTCCATTTCCTATGATTTCAATCTCAAAATTTCGTTGCATCTTCCACACACTAGAAGCCACAAGAAAACAAGTATATGTTGCATTGAGAAGTTGTCATTCTAGGTCTGAATGGGTTCAGAGGGGTTTGGATAACTTGGCACCAAATGAGAAGCCAAAGAGGGTTGGGCTTTTCTGGGACTTGGACAATAAACCCCCCAACAAAATCCCACCTTATGAAGTTGCCAATAAGCTCAGAATAGCTGCATCTTCCTTCGGGGTTGTTCGCCATATGGTGGCTTATGCAAACAGTCACACTTTTAGCCATGTCCCTCAGCCAGTCAGGGAGAGGAGGAAGGAGAGGGCGCTGTTGAATCGGTTAGAGAATAAGGGTGTTATCAAGCGAAACGAGCCGTATCTTTGTCGGGTTTGCGGGAGAAAATTCTATACTAATGAAAGGCTTGTTAACCATTTCAAGCAACTGCATGAGAGTGAGCACAGGAAAAGGATGAACCAGATTGAGTCAGCCAAGGGGAACAGGAGGGTCAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGGGCTGTTTTGACTCCGAAAGTGGGGTATGGTTTGGCAGACGAGCTGAAACGGGCGGGGTTTTGGGTACAAACTGTGTTGGATAAACCAGAAGCTGCTGATCTTGCGTTGCAAAGTCACATGGTAGATATGATGGATCATCGGCGAGTTGAGTGTGTGGTTCTTGTATCTGATGATTCTGATTTTGTCGATGTAATAGAAGAAGCAAAGCTTAGATGTCTCAAAACGGTTGTCATTGGGGATACTCCTGATGGAGTCCTGAAGAGGACTGCCGATGCTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAGGAGGCTGTGTCAGTTGTTGAAAACTGGAAAGATCGTGATATCTTAAAAAGGTTAGAGTGGACATATAATCCTGAAGTGGGTAAAAAGAAATTCAATCTGAATGATACGGTTGCTGAAACATCTGAAGATGATGATATCATAGATATCGGTGATGAAGTTGATGATGACCATGAGGATGATAGAGGTTCTTGGTGGGAATTAGATTCTGACGATGATGTCTCAACTGGACAGTTAGACAAATTATCTACCATGTCTGTGAGAAGGTGA 1254 0.4402 MTTRVEFCSGSTRPSQRLQSSSGHLICRIESPFPMISISKFRCIFHTLEATRKQVYVALRSCHSRSEWVQRGLDNLAPNEKPKRVGLFWDLDNKPPNKIPPYEVANKLRIAASSFGVVRHMVAYANSHTFSHVPQPVRERRKERALLNRLENKGVIKRNEPYLCRVCGRKFYTNERLVNHFKQLHESEHRKRMNQIESAKGNRRVKLVAKYSMKMEKYKKAARAVLTPKVGYGLADELKRAGFWVQTVLDKPEAADLALQSHMVDMMDHRRVECVVLVSDDSDFVDVIEEAKLRCLKTVVIGDTPDGVLKRTADAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVGKKKFNLNDTVAETSEDDDIIDIGDEVDDDHEDDRGSWWELDSDDDVSTGQLDKLSTMSVRR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0589 417 Gene3D - 75 323 - -
Lja3g0589 417 SUPERFAMILY beta-beta-alpha zinc fingers 161 187 IPR036236 -
Lja3g0589 417 PANTHER - 61 403 - -
Lja3g0589 417 MobiDBLite consensus disorder prediction 373 388 - -
Lja3g0589 417 Pfam NYN domain 233 314 IPR021139 GO:0004540
Lja3g0589 417 ProSitePatterns Zinc finger C2H2 type domain signature. 164 185 IPR013087 -
Lja3g0589 417 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 61 403 - -
Lja3g0589 417 MobiDBLite consensus disorder prediction 373 417 - -
Lja3g0589 417 CDD PIN_LabA-like 172 303 - -
Lja3g0589 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 190 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0589 Lja-Chr3 5784389 5786066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0589 79 406 C2H2 Transcription Factor Family AT4G12240 62.614 7.83e-149 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0589 NYN 2.7e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0589 - - lja:Lj3g3v3326020.1 815.839