Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0587 ATGCCGAAGCAAATTCATGAGATCAAAGACTTCCTCCTCACTGCCCGGAGGAAGGATGCACGTTCGGTGAAAATCAAGAGGAGCAAAGATGTGGTCAAGTTCAAGGTCCGGTGCTCCAAATACCTGTACACCCTTTGTGTGTTTGACACTGAGAAGGCTGATAAGTTGAAGCAATCACTTCCCCCAGGTTTGAGTGTTCAAGACCTGTGA 210 0.4762 MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLSVQDL* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0587 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Lja3g0587 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Lja3g0587 69 Gene3D - 1 69 IPR038464 -
Lja3g0587 69 PANTHER - 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0587 Lja-Chr3 5769176 5771196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0587 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 95.652 2.28e-44 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0587 K02923 - twl:120000857 138.658