Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0582 ATGGAAGACCACCTTTCCCCTAAGGGAAAAGGAATTGGTTATTCGGCATCGTTCGATGGTGGAATGAAAAATTCAGCTTCGGAGGACATGTTTAACAACATCTCCGAGCTCATGAACTTCGATACTTATGCTGGTTGGTGCAATAGCCCATCCATGACTGATCCGAATTTGGCTAACGGTCTTACGCCATTTGTTTCGGTACCATACCCACCACCTGATGGATTGAATTTAGTGGAGCAGAGCAGTGGTCCCTTCTTTATGACAGAAGCCACTGGAAATTACAATGATATGCAAAGCTCGCCCAGTTATGGCGACAGAGTTGTATTACAGCAAATGGAAAACCAATTTGAGTTCTTTGATGTTCTAAATGATACAAATAACTTAGATGCTAAACAAAAACAAAGTGTCCCATTTCAGCAACTTAATACCTCAGATATGGGCAATCATATAATGTCCTGGTCATCTAGTTGGTCACTTGATGAGAGAATGCTGAAGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTCTGGGTACCCGTAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAGCAACCCTATTTGCTAGATCATAAGCTTGCAGGGTATCGTGAAGTGTCAAGGACGTTTACATTTTCTGCAGAAGGAAAAGCAGGCTCTTGTCCTGGGCTTCCTGGTCGCGTGTTCACCTCCCATGTTCCTGAATGGACATCCAATGTTGGTTACTACAATAAAACTGAGTACTCGCGGTTGGAGCATGCGATTAATCATGAGGTTCGGGGATCAATTGCTCTTCCTATATCCGATCCGGACTCTAAAGTGCCATGTAGTGCTGTCCTTGAACTTGTCACTACAAAGGAAAAGTCTAATTTTGACAGAGAATTGGAAATCGTTTCTCAGGCGCTCCAGCATGTACATTTAAGGACTATTACGCCGCCACGACTTCTTCCTCAGTCTCTATCAAATAACAAAAGAGCTGCTTTATCTGAGATAATTGATGTGTTACGAGCTGTATGTCATGCCCATAGATTGCCACTGGCACTTACATGGATTCCCTGTTGTTACAGTGAGGGAATAGGAGATGAAACCGAGAGAATCCGAATTAAAGAAGGCCATATAAGTTCTAATGAAAAATGTGTTCTATGTATTGAAGAATCAGCTTGCTATATAAATGATAAAATGGTAGGAGGATTTGTTCATGCATGCACTGAACATCATCTCGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATCCCGATGTCAAGTCTTATGATATCAGTGAATATCCCCTTGTTCATCATGCACGCAAATATAATTTGAATGCGGCAGTTGCAATTAGGCTAAGGAGTACATATACTAATGATGATGATTACATATTAGAATTCTTTCTGCCTGTCAATATGACAGGGAGTTTAGAACAGCAACTTCTATTAGACAATCTCTCAGGTACTATGCAGAGAATTTGTAAGAGTTTGAGGACCGTTTCAGATGCTGAATTAACAGGGATAGAAAGCTCCCAAGTTGGGTTTCAAAAGGAAAAAGTCCAAGGTATTTTTCCTATATCCGGTAGAAACTCTCAGACGGCATCAATAGGTTGTGACTATGATTTGGACCGGAAGATGTACTTGAAGGCAACTAACCTGAGAAATAATGGAATCGAAGCTGCTAGAAGCCAGGCAATTAATGGATCAAGAAAGCAGGTTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGCAGTCTGAAGGATGCTGCGAAAAGCATTGGTGTTTGCCCAACAACTCTTAAGAGGATATGCAGGCAACATGGAATTTCAAGATGGCCGTCCCGCAAGATTAATAAAGTGAATCGTTCATTAAAGAAAATACAGATTGTGCTTGACTCTGTCCAAGGAATGGAAGGAGGGCTGAAGTTCGATCCTTGTACTGGGGGTTTTGTAGCAGGAGGATCAATCATCCAAGACATTAGTGCACATAAAAGTATTCTGTTCCCTGAGAGAAGTGCTGTGAAAGACACTGAGCCTGTAGTACGAGAAGTGGTCTCAGGAGTACCTCCAGCACCTGGTAGCCCAGGTGAGAACTCAGCCATTGAGTTGGAGGATGATGGTGTTTGTTCGGTTGGGAACCAGCTTGTGCACTCAACAAGTGTACTTATGTCTAATTCCTATGAGGGCGAGTTGAAGATAGACAATGCTTCTTCTGCTGATGGTAGTGAAGATTCAAAATCAATGGCTGTGGATGATGTGACCAAGGCTCAGGACTGTCCTGAACAAAACTCTCTAGGTTCTGTTCTTGAAAAAGAGGGGGACCAATGGAGTTTGAACAAGTACGGTATGGGAGTAGAAAATTCCATCCATGATATTGTTTGTAATACTAATAGTTCAATCTCCTTGATTGAACTTAGCGGCGATGGAGGAAATGGTGCTGATGAACATAACCACCCCACTTCTTCAAGCATGACAGACTCTTCCAATGGCTCTGGCTCAATGACGCTTGGCTGTTCATCAGGCTCCCAGAGCTTTGAGAATCAGAAGAAATCGAAAGCCAAATCAGCTTGTGTTGTTGATAGTGGGTCAAAAATGGTTGTCAAAGCTACCTATAGAGGAGACACTATCCGCTTCAAGTTTGATCCATCTGCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAACGGGTCATTCCAGCTTCGATATCTAGATGATGAAGAGGAATGGGTGATGATGGTGAATGACTCAGATTTGCAAGAATGTGTAGAAATTTTGGGTGATATTGGTGCAACTTGTGTGAAGTTTCTTGTTCGCGACACGACCGGTGTTTTAAGGAGCCGTAGCAGTAATAGTTGCTTCTTGTCAGAGAGCTCATAG 2958 0.4226 MEDHLSPKGKGIGYSASFDGGMKNSASEDMFNNISELMNFDTYAGWCNSPSMTDPNLANGLTPFVSVPYPPPDGLNLVEQSSGPFFMTEATGNYNDMQSSPSYGDRVVLQQMENQFEFFDVLNDTNNLDAKQKQSVPFQQLNTSDMGNHIMSWSSSWSLDERMLKALSFFKESAGGGILAQVWVPVKHGDEFILSTSEQPYLLDHKLAGYREVSRTFTFSAEGKAGSCPGLPGRVFTSHVPEWTSNVGYYNKTEYSRLEHAINHEVRGSIALPISDPDSKVPCSAVLELVTTKEKSNFDRELEIVSQALQHVHLRTITPPRLLPQSLSNNKRAALSEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDETERIRIKEGHISSNEKCVLCIEESACYINDKMVGGFVHACTEHHLEEGQGIAGKALQSNHPFFYPDVKSYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSLEQQLLLDNLSGTMQRICKSLRTVSDAELTGIESSQVGFQKEKVQGIFPISGRNSQTASIGCDYDLDRKMYLKATNLRNNGIEAARSQAINGSRKQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQIVLDSVQGMEGGLKFDPCTGGFVAGGSIIQDISAHKSILFPERSAVKDTEPVVREVVSGVPPAPGSPGENSAIELEDDGVCSVGNQLVHSTSVLMSNSYEGELKIDNASSADGSEDSKSMAVDDVTKAQDCPEQNSLGSVLEKEGDQWSLNKYGMGVENSIHDIVCNTNSSISLIELSGDGGNGADEHNHPTSSSMTDSSNGSGSMTLGCSSGSQSFENQKKSKAKSACVVDSGSKMVVKATYRGDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLRYLDDEEEWVMMVNDSDLQECVEILGDIGATCVKFLVRDTTGVLRSRSSNSCFLSESS* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0582 985 MobiDBLite consensus disorder prediction 827 862 - -
Lja3g0582 985 MobiDBLite consensus disorder prediction 836 862 - -
Lja3g0582 985 ProSiteProfiles RWP-RK domain profile. 573 661 IPR003035 -
Lja3g0582 985 Pfam PB1 domain 887 966 IPR000270 GO:0005515
Lja3g0582 985 Pfam RWP-RK domain 593 641 IPR003035 -
Lja3g0582 985 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 13 982 - -
Lja3g0582 985 SUPERFAMILY CAD & PB1 domains 879 969 - -
Lja3g0582 985 Gene3D - 882 961 - -
Lja3g0582 985 ProSiteProfiles PB1 domain profile. 885 967 IPR000270 GO:0005515
Lja3g0582 985 SMART PB1_new 885 967 IPR000270 GO:0005515
Lja3g0582 985 MobiDBLite consensus disorder prediction 756 791 - -
Lja3g0582 985 PANTHER PROTEIN NLP8 13 982 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0582 Lja-Chr3 5711247 5715358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0582 7 981 NLP Transcription Factor Family AT2G43500 48.491 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lja3g0582 PB1 2.2e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0582 - - aprc:113864503 1498.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4994 3 92087461 92093166 Lja3g0582 3 5711247 5715358 PCT