Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0572 ATGCCGCGCCCTTCTTTCTACAAGCTTGTTCTACCCTCCACTGTTCAAGCCAAGCAATTGAGGCTCCCGGATAATTTTATGAGGAAATATGGGGGTGAGCTTTCTCCATTTGCTACCCTCTCTGTTCCTGACGGTAGTGTCTGGCGTGTAGGATTAAAAAAGGCAGACAACAAATCTTGGCTCGTTGATGGTTGGCAAGAATTTGTTCAACGCTATTCCATTGGCGTTGGATACTTGTTGGTATTCAGATATGAAGGCAAGTCATCTTTCAATGTTAATATCTTGGCTACTTCTGAGATAAACTATCAACCAGCCACACGCAGCAGTAATGAAGGGCCTTACTTCGCAAGTCGGCTTAAATTTCTTGAAGAAATGGAAGATGAAGATTCCATTGAAATCTTGGATTCATCACCTTCGCACCTCACTCCTGGTAGTACATTGCCAAACAAAGCTTTTCCTGGATCAGTAGATAAGTCAACACCTGGAGGCAAGAGTTATTCGCCTCCAGCATTGCAGAATCTGTTTAATGGGTCTAAACTTAATAGTATTAACAGGGGAGAGGGCGGGAATACCCTTTCTTCAAGAAGTGCCAATTCACAAGACAAAAAGTTGTCCAGGGATATAGGTGTCCAGTTTAATGCAGCTGAGTTTAAAAGGTCTAATGAAGAAGTGAAATTGCGCGCATCTATGGAGGAAAGAATTAAAAAAACTGCGACGAAGAAGCGTAAATCAGAAGACCAGGAACATGAAGAGGAGGTAGAAATGCGCGTTAGATTTTACGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCTGAAGAAAGAGAAAAGGCCGTCAATGCAGCAAAAGAGTTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCCTCCTATTTATACAGAGGATGCATTATGTATTTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGGTGTTTCGGGATTCATTAAACTTCAAACCTCTGATGGGAGACAGTGGCCGGTTCGCTGCCTTTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGTTGGTTTGAATTTGCATTAGATAACAATTTAGGTGAAGGTGATGTCTGTGTGTTTGAGCTCCTTAAAGTGAAGGATGTGGCGCTGCAAGTTACTCTATTTCGTGTCACTGAAGATGTGGGATTGTTGAGCTCTCCCTTGCAGCAGAACGAAAATGCGGTATCAGCTAAACAATTGAGTTCTCCCTTGCAGCATCACCTCACTTCATCTAAACTAGTTAGAAATTAA 1278 0.428 MPRPSFYKLVLPSTVQAKQLRLPDNFMRKYGGELSPFATLSVPDGSVWRVGLKKADNKSWLVDGWQEFVQRYSIGVGYLLVFRYEGKSSFNVNILATSEINYQPATRSSNEGPYFASRLKFLEEMEDEDSIEILDSSPSHLTPGSTLPNKAFPGSVDKSTPGGKSYSPPALQNLFNGSKLNSINRGEGGNTLSSRSANSQDKKLSRDIGVQFNAAEFKRSNEEVKLRASMEERIKKTATKKRKSEDQEHEEEVEMRVRFYESASARKRTVTAEEREKAVNAAKEFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQTSDGRQWPVRCLYRGGRAKLSQGWFEFALDNNLGEGDVCVFELLKVKDVALQVTLFRVTEDVGLLSSPLQQNENAVSAKQLSSPLQHHLTSSKLVRN* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0572 425 Gene3D - 1 99 IPR015300 -
Lja3g0572 425 CDD B3_DNA 4 95 IPR003340 GO:0003677
Lja3g0572 425 Pfam B3 DNA binding domain 7 94 IPR003340 GO:0003677
Lja3g0572 425 Pfam B3 DNA binding domain 295 385 IPR003340 GO:0003677
Lja3g0572 425 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lja3g0572 425 ProSiteProfiles B3 DNA-binding domain profile. 292 387 IPR003340 GO:0003677
Lja3g0572 425 Gene3D - 269 390 IPR015300 -
Lja3g0572 425 MobiDBLite consensus disorder prediction 135 153 - -
Lja3g0572 425 Coils Coil 227 247 - -
Lja3g0572 425 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 414 - -
Lja3g0572 425 MobiDBLite consensus disorder prediction 160 204 - -
Lja3g0572 425 CDD B3_DNA 290 385 IPR003340 GO:0003677
Lja3g0572 425 SUPERFAMILY DNA-binding pseudobarrel domain 285 386 IPR015300 -
Lja3g0572 425 SMART B3_2 292 387 IPR003340 GO:0003677
Lja3g0572 425 SMART B3_2 6 98 IPR003340 GO:0003677
Lja3g0572 425 MobiDBLite consensus disorder prediction 134 204 - -
Lja3g0572 425 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Lja3g0572 425 PANTHER B3 DOMAIN-CONTAINING 1 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0572 Lja-Chr3 5639831 5643522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0572 1 391 B3 DNA Binding Superfamily AT3G18990 51.010 2.12e-125 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g0572 B3 5.1e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0572 - - gmx:100813285 681.789