Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0571 ATGGCTGACACAACCCCTATTTACCCTGCCTTCTTCAGAATCTTCCTTTCAGATCATCACTCTGAAAGAATGAAAGTTCCACCGGAATTTCTGAAGTATTTGGAAGAAGACTTTTCAGCAAATGTGATTCTTATAGGTTCATCTGGTTACCAGTGGCAAGTGACCATTTTCAAGGGTGAAAAGGTATATATGCAAAATGGCTGGCCACAGGTTCTTACAGACAACTCAGTGAAGTCGAAGGAGTTGTTGCTTTTTACATATAATGGACAGAACCGATTCCTAGTGCAATTTTTCAGTAGCAATGGATGTGAGAGACAATGCACTAAAACAATAAAACATGAAGAAGCTGCCACCCCAATCTTGGTGCAGAAAAGAAAGAGGGGAAGACCAAGAAAAGAAAAGGGACTCCCAACCAATTTCGTCAACCAGATGAAAGAATGCCATATCAGCAAAGAATGTGAAAGAGCCTCCCAACCAGCAAAGAAGTACCCTGACTTTTTTAAAGTTTTCCTCCCAGAACGACACTCTGAAAGAATGCTTATGCCAAATGCTTTCGTAAAGTTGGCACGCCAACAAGGATGGGAACCCAGGGATCTCATCCTTAAGAACTCTCATGGGAAAGTTTGGGAAGTCAAAGCAATTCCAATCGACAATCAACTGTATTTTGATGTTGGATGGAAGCAGTTCCGAGAAGATAATTGTTTAAAGGCTGCAAACTTTGTTTTTCTTACACATATTGAAAGTAATGAGTTCAAGTTTAAGATCTGTGAATCAACAGGGTGTGAAAGGACAAAGGTAAATGGTAGAAAAGAACAAGACATGGTAAGGGAGGATGCGGTAGAGCTCGATGAGGAGGAAGAAGAAGACGAGGATGATGATGATTATGTTGTGGATGAGGATGAGGATGAAGATGATGATGAGAACGAGGATGAGGATGTTGATGTTGATGTTGATGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGATGATGACAATGAGGATGAGGATGAGGAGGACACAGAGGAGGATGAAGAAGAAGTCAAGGCAACCAAAAGGAGACAATCTCCTGCTAAAGCCTGCAAAGTCAACTTGAACAGGGAGAAGGGAGGCAGTTCTGGGACCAAGGTTCAGCCTTTACCTGCTGATTTATTTGGTTTAGGGGAGAAGGGAGGCAGTTCTGGGACCAAGATTCAGCCTTTACCTGTTGATATATTTGGTATAGGGGAGAAGGGAGGCAGTTCTGAGACCAAGGCTGAAGATGCAGAACATGATGAAATTGATGCAGAATTCTATATTCACCCGGACAATCCCTACTTCCCTGTTAAACTATGGAAAACTAGACCCAACGATTTGCATATTCCACATACAGTCCTCAAAGACTTTTCCCCTTGGTTTGGAAAAAAAGTCACCCTTGTGTGTTGCCAGTGTCAGAATATTCAAAGAAATGAACTTCAAAACTACCATCTCAGCTTGCATCAACAACAGACATCCATCAGCAGAAGACACACAGAAGTGGGAGAAGTAGCTAGGTGGAAAGATGGGCGAGTGTGTATCAAAGGGTGGTTATCTTTTCGCAGAAAGAACAAGATCAAAGAAAATGATGCATGCATCTGTGAAATTGTGTGGCAGGAACATCAAGAAATAGAAATGATACGGGTGCATGTAGCAAAGAAGAAATGA 1707 0.4212 MADTTPIYPAFFRIFLSDHHSERMKVPPEFLKYLEEDFSANVILIGSSGYQWQVTIFKGEKVYMQNGWPQVLTDNSVKSKELLLFTYNGQNRFLVQFFSSNGCERQCTKTIKHEEAATPILVQKRKRGRPRKEKGLPTNFVNQMKECHISKECERASQPAKKYPDFFKVFLPERHSERMLMPNAFVKLARQQGWEPRDLILKNSHGKVWEVKAIPIDNQLYFDVGWKQFREDNCLKAANFVFLTHIESNEFKFKICESTGCERTKVNGRKEQDMVREDAVELDEEEEEDEDDDDYVVDEDEDEDDDENEDEDVDVDVDVGVGVGVGVGVGVGVGVGVDDDNEDEDEEDTEEDEEEVKATKRRQSPAKACKVNLNREKGGSSGTKVQPLPADLFGLGEKGGSSGTKIQPLPVDIFGIGEKGGSSETKAEDAEHDEIDAEFYIHPDNPYFPVKLWKTRPNDLHIPHTVLKDFSPWFGKKVTLVCCQCQNIQRNELQNYHLSLHQQQTSISRRHTEVGEVARWKDGRVCIKGWLSFRRKNKIKENDACICEIVWQEHQEIEMIRVHVAKKK* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0571 568 MobiDBLite consensus disorder prediction 331 385 - -
Lja3g0571 568 SUPERFAMILY DNA-binding pseudobarrel domain 8 103 IPR015300 -
Lja3g0571 568 ProSiteProfiles B3 DNA-binding domain profile. 9 101 IPR003340 GO:0003677
Lja3g0571 568 MobiDBLite consensus disorder prediction 337 353 - -
Lja3g0571 568 Pfam B3 DNA binding domain 15 100 IPR003340 GO:0003677
Lja3g0571 568 Pfam B3 DNA binding domain 166 258 IPR003340 GO:0003677
Lja3g0571 568 ProSiteProfiles B3 DNA-binding domain profile. 164 259 IPR003340 GO:0003677
Lja3g0571 568 MobiDBLite consensus disorder prediction 278 316 - -
Lja3g0571 568 MobiDBLite consensus disorder prediction 272 316 - -
Lja3g0571 568 SUPERFAMILY DNA-binding pseudobarrel domain 162 261 IPR015300 -
Lja3g0571 568 PANTHER B3 DOMAIN-CONTAINING 158 564 - -
Lja3g0571 568 PANTHER B3 DOMAIN-CONTAINING 8 145 - -
Lja3g0571 568 CDD B3_DNA 164 256 IPR003340 GO:0003677
Lja3g0571 568 Gene3D - 425 567 IPR015300 -
Lja3g0571 568 SUPERFAMILY DNA-binding pseudobarrel domain 441 559 IPR015300 -
Lja3g0571 568 SMART B3_2 11 101 IPR003340 GO:0003677
Lja3g0571 568 SMART B3_2 166 259 IPR003340 GO:0003677
Lja3g0571 568 Gene3D - 6 103 IPR015300 -
Lja3g0571 568 Gene3D - 157 261 IPR015300 -
Lja3g0571 568 CDD B3_DNA 9 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0571 Lja-Chr3 5633164 5636337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0571 445 567 REM Transcription Factor Family AT3G53310 30.645 4.21e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g0571 B3 7.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0571 - - lja:Lj3g3v3315950.1 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0571 3 5633164 5636337 Lja3g0571 3 5633164 5636337 ECH