Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0570 ATGGATAACAAGTATCCTGGCTTTTTCAAAGTTTATGTTCCAGAACTACACTCTGAAAAAATGCCTATACCAAATGCTTTTGTGAAGATGGCACTCCAACAAGGATGGGAACCCAGGGATGTTATTCTTAAGAACAGTAGGGGGAAAGTTTGGGAAGTCAAAACACTGGCAATTTATAGTCAGCTGTATTTTGGTGATGGTTGGAAGCAGTTCAGGGAAGATAACTGTTTAGGGGCTATGGACTTTGTCTTTTTTACACATGTTGAAGACAATGTGTTCAACTTTAAGATCTGTGAGCTATCAACAGGGTGTGAAAAGATGAAGGTAGAGGATAGTGAAGAACAAGAAAAAGAAAAGGGTGATGTTGATGATGTGATGGAGTTGGATAAGGAGGAGGACGTAAAACAACAAGATGGGGATGGTGATGAACATGATCCTGGGCAAGATGATTCTGGTGATGAGGTGGAGGAGAAAGAAGAAGATCAGCAACAAGAAGATGAGGATGGTGATGAACATGATCCTAGTGAAGATGATGATTCTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGCAACAAGATGAGGATGATGATGATTATGATCCTGGTGAAAAACATGGAAAAGGAAAGTATGATGTGATAGAGTTGGATGACGAGGAAGAAGAAGAAGAACAAGATGAGGATGGTGATGAAGATGATTCTAGTGAAGATGATTCTAGTGATGAGGAGGAGCAAGAAGAACAAGAACAACAAGATGAGGATGATGATGATTATGATCCTGGTGAAGATGATTCTGATGATGATGAGGAGGTTGAGGAGGAGGAGAATACAGAGTTGGAAGAGGGGGATGAAGAAGAATCCAAGTTAACCAAAAAGAGAAAATCTCATCCCAAAGTCTGCAAAGTTAGCTCCAAAAGGGAGATTGGAAGTAGTTCAGTCACCAAGGCTGAAGATGCAGGACATGAAAACATTGATGCAGCAATGTATATTCGACGTGACCATCCCTACTTCATTGTCAAACTACTGAAAGGCAGGCGCAATGAATTGCATATTCCACACTTAATCATCAAAGACTTTTCCCTTTGTTTTAAAAACAAGATAACTCTTGTATGCTGCCAGTGCCAGAATATTCCAAGAACTCAACTGCGAAACTACCATGGCACCTTGCCTCAACTGACACCCGCCAACAAAAAACACACAGAAGAGGGAGAATTAAGCGTGTGGAGAGATGGGCGAGTGTGTATCAAAGGGTGGTTACATTTTTGCAGAAAGAACAAGATCAAAGAAAACGATTCATGCATCTGTGAAATTGTGTTGCGGGAAGACCAACCAATAGAAATGTTCCGGGTGCATGTAGCTAATAAGAAGTGA 1377 0.4132 MDNKYPGFFKVYVPELHSEKMPIPNAFVKMALQQGWEPRDVILKNSRGKVWEVKTLAIYSQLYFGDGWKQFREDNCLGAMDFVFFTHVEDNVFNFKICELSTGCEKMKVEDSEEQEKEKGDVDDVMELDKEEDVKQQDGDGDEHDPGQDDSGDEVEEKEEDQQQEDEDGDEHDPSEDDDSEEEEEEEEEEEEEQQDEDDDDYDPGEKHGKGKYDVIELDDEEEEEEQDEDGDEDDSSEDDSSDEEEQEEQEQQDEDDDDYDPGEDDSDDDEEVEEEENTELEEGDEEESKLTKKRKSHPKVCKVSSKREIGSSSVTKAEDAGHENIDAAMYIRRDHPYFIVKLLKGRRNELHIPHLIIKDFSLCFKNKITLVCCQCQNIPRTQLRNYHGTLPQLTPANKKHTEEGELSVWRDGRVCIKGWLHFCRKNKIKENDSCICEIVLREDQPIEMFRVHVANKK* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0570 458 Gene3D - 1 104 IPR015300 -
Lja3g0570 458 SUPERFAMILY DNA-binding pseudobarrel domain 335 454 IPR015300 -
Lja3g0570 458 Coils Coil 175 201 - -
Lja3g0570 458 MobiDBLite consensus disorder prediction 106 296 - -
Lja3g0570 458 Gene3D - 316 457 IPR015300 -
Lja3g0570 458 CDD B3_DNA 6 98 IPR003340 GO:0003677
Lja3g0570 458 Pfam B3 DNA binding domain 8 99 IPR003340 GO:0003677
Lja3g0570 458 SUPERFAMILY DNA-binding pseudobarrel domain 2 98 IPR015300 -
Lja3g0570 458 SMART B3_2 8 101 IPR003340 GO:0003677
Lja3g0570 458 ProSiteProfiles B3 DNA-binding domain profile. 6 101 IPR003340 GO:0003677
Lja3g0570 458 MobiDBLite consensus disorder prediction 143 202 - -
Lja3g0570 458 MobiDBLite consensus disorder prediction 106 142 - -
Lja3g0570 458 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 1 226 - -
Lja3g0570 458 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 219 453 - -
Lja3g0570 458 PANTHER B3 DOMAIN-CONTAINING 1 226 - -
Lja3g0570 458 PANTHER B3 DOMAIN-CONTAINING 219 453 - -
Lja3g0570 458 MobiDBLite consensus disorder prediction 217 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0570 Lja-Chr3 5628740 5630823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0570 6 157 REM Transcription Factor Family AT3G06220 27.950 3.63e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g0570 B3 8.5e-14 CL0405