Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0565 ATGGGAGGAATCGGTAAAACAACAATTGCTCGTGCAGTATATCACAGACTTGCTGCTCAGTTCTGTTCTAGCAAATTGGTTGTAAATATTCAACAAGAAATAGAAAGAGATGGAATACACAGGATCATATCCAAATATTTGACAGAGCTTTATCAGGAAGATAACACACTGAAAAAGGTTCTCCTCGTTCTTGATGATGTGAAAAATTCGGGTCAAGTTGCAGAATTAATTGGAGAGTGCGGCAACTTCAACTTCGGCCCGGGAAGTAGAATTATTCTGACTAGTAGAGACATGCAAGTGCTTAAGAATGCCAACGCTGATGAAATATATGAAGTCAAGGAGATGAGTTTTGAAGATTCTCTACAACTCTTCAGTTTAAATGCCTTCAAAAGAAACGATCCCTTAGAAACTTATATAGACTTATCAAAAAAATTATTAAGTTATGCTAAAGGGATTCCATTAGCTCTCAAAGTTTTGGGCTTATTTCTTTATGGTAGAGAAAGGAAAGCATGGGAAAGTCAGTTGGTAAAGCTGGAAAAGCTTCCTGATCCTGAAATTATAAATGTGTTGAAATTAAGTTATGATGGGCTTGATGATGATCAAAAGGATATATTTCTTGACATAGCTTGCTTCTATTTAGGACATCTGGAGGAGTCTGTGGCACAAACACTGGATAGCTGTGGTTTCTTTGCTGACATTGGCATGGAGGTTCTCAAAGATAGGTGTCTTATTTCTATTTTGGAAGGTAGAATCGTGATGCATGATCTAATAGAGGTAATGGGAAAAGAAATAGTTCGTCAACAATGTCCCAATGATCCTGGAAAACGCAGTCGATTATGGAACGATGATCAAACATATGATGTTTTAGGCAAAAATAAGGGGACAGATGCAATCCAGTGTATATTCCTCAACACATGCAAAATAAAAAAAGTTAACCTACATGCTGAAACTTTCAAAAACATGACTAATCTGAGAATGCTCCAGTTCTATAAGTCTCGTGTCTTTTCCCTTGAATCGAATGTGATCCTTCCTGCATCTCTTGGAAGTCTCCCGAATCATTTAAAATTTCTTCGTTGGGATGGATTTCCCCAAAGATATTTTCCGCTGGACTTTTGTCCACAAAATCTTGTTAAACTTGATATGCGCGATAGCCATCTTGAACAACTTTGGGAGGAAGATCAGGATTTACCAAATTTGAAAAGGCTGGATCTTAGTTATTCTCGGAAGCTGATTCGAATACCAAACCTTTCAACGTCCCCAAATATTGAAGAAATAATTCTCAGTCATTGTGAAAGTTTGGTTCAAATTTACTGCTCCGGATTCCTCAGCAAGCTCAATGTTTTGCGTTTAAATGGTTGTGTTAAGCTTACGAGTTTAAATCTTCCTAGCAATATTCTATCGGAACGTTCTGGATTAGTTGTTCTCTATAACTGTCGCAAACTCAAAACATTTTCATTCAGTAGGAGAGCCGAAGTGATTGAATCACATGGTTGTCCGCGACCGCATCAGAATATATTATGGGTTAATGGAATAGCTCAATGTTCTCTAGGAGTAGGAAGGGCTTTTGGAACCTCTCAGCTTTATAGGGCATTAGGTCTAGAGACCGAGGAATATTCTTCAGATGCTTTTGACCCCATTCTTAGTATTGACAGATATGAAAATGAATGGGCAGATAATGCATACTCACGGGAAATTGAAGTGGTGAGAGAAACTGTGTCTTCACTATTTCCCAGTCTCCATGAGCTTTGTTGGTTAGATCTGGATAGTTGTGAATCCCTTAAAAGCCTTCCAATTGACCTTTGTAAGTTGAAATTACTAAGAAGACTTTATCTTAGTGGTTGCTCAAATTTGGAAAAAATCCCTGAAATTGAGGAGACAATGGAAAATTTAACAGTGCTTGTCTTAGACGAAACAGCGATACTGGAACTACCTTCATCCTTGCACCATTTGGTGGGGCTTGAAGAATTGAGCTTGCACAATTGCCAAAGGCTTGAGACTATTCCATCTTGCATTGGAAGTCTCACCAAACTCAGCAAGTTACGCCTTACCTGTTGTGAATCACTTAAAACTTTCCCAAGCAGCATTTTCATGTTGAAGTTGACAAAACTAGATTTGAGTGGTTGCTCAATGCTAAAGACCTTCCCAGATATCTTGGAGCCTGCAGAAAGTTTTTCTCACATTATCTTAACAAAAACAGCAGTTAAAGAACTGCCTTCATCATTGGATTGTTTGGTTGGACTTCAAACCTTGTGTCTGAACTTGTGCAGTGATCTGGAGTCACTTCCAAACAATATCGGTAATCTGAGCCTTCTCTCTAAGCTTGACTGTTCAGGCTGTGGCAAATTAACAGAAATCCCAAATAGCATTGCTCGTCTGTCATCATTAAGGGAATTGTCATTGCAAGGAACCGGAATCGTGAACCTTTCAGAGAGCATTGCTCATCTATCAAGCTTGGAATCACTTGATGTAAGTGATTGCAGAAATCTTGAATGTATCCCACCGCTTCCACCACTTCTGAAACAGTTATTAGCCTTTGATTGCCCATCCATTAGAAGAGTGATGTCAAATTCAAGGTTTAAACACCCATCAAATTCCAAAGAGGGTGCCTTCAAACTTCATTTCACCAATAATGAAGAACAGCATCCAAGTGCTCATAGTAATATTGTGGCCGATGCCAGGTTTAGGATCACCCAAAATTCATATGGCTCTGTGTTCTATTGCTTTCCAGGGAGTGTGGTTCCTGATTGGTTCCCTTATCGTTGTGAGGGACATTCAGTAACTGTGGATAAAGATTCTCTAAAGTGGTGCAATGATCATAGGCTCCTTGGTTTCGCTCTGTGTGTCGTTTTGCGACTTGAAGGCACGGATGATACAAAATATAAATCTGGTGAATTTAGATACACATTAACATTCAAATCTGATGGTCGCACACACATCCTTCCCAACCATGATCAGCTAAACAACCGTTTCTATTGGAAGGGTCGAACGAGATATGTCGGGCGAGATCACACATTTCTATGGAAATATTACTTAATGGACTCTGGAAACATCGATAACAGGATCTTTCAATCCCACAACTTCACTTTTGAGATCAGCAAGCGTAGCCATCGGCTGTCATCTATTGGATCGGGTCCTGAGGTGAAAGAGTGCGGAATATGTCCTCTTTATACCAACGAAAAAGATGATAATGGTGACATTGATGACTATTCCAGACTTTCAAAGAATGCAGTAGGAAGAGGCAATGTCTAA 3249 0.3927 MGGIGKTTIARAVYHRLAAQFCSSKLVVNIQQEIERDGIHRIISKYLTELYQEDNTLKKVLLVLDDVKNSGQVAELIGECGNFNFGPGSRIILTSRDMQVLKNANADEIYEVKEMSFEDSLQLFSLNAFKRNDPLETYIDLSKKLLSYAKGIPLALKVLGLFLYGRERKAWESQLVKLEKLPDPEIINVLKLSYDGLDDDQKDIFLDIACFYLGHLEESVAQTLDSCGFFADIGMEVLKDRCLISILEGRIVMHDLIEVMGKEIVRQQCPNDPGKRSRLWNDDQTYDVLGKNKGTDAIQCIFLNTCKIKKVNLHAETFKNMTNLRMLQFYKSRVFSLESNVILPASLGSLPNHLKFLRWDGFPQRYFPLDFCPQNLVKLDMRDSHLEQLWEEDQDLPNLKRLDLSYSRKLIRIPNLSTSPNIEEIILSHCESLVQIYCSGFLSKLNVLRLNGCVKLTSLNLPSNILSERSGLVVLYNCRKLKTFSFSRRAEVIESHGCPRPHQNILWVNGIAQCSLGVGRAFGTSQLYRALGLETEEYSSDAFDPILSIDRYENEWADNAYSREIEVVRETVSSLFPSLHELCWLDLDSCESLKSLPIDLCKLKLLRRLYLSGCSNLEKIPEIEETMENLTVLVLDETAILELPSSLHHLVGLEELSLHNCQRLETIPSCIGSLTKLSKLRLTCCESLKTFPSSIFMLKLTKLDLSGCSMLKTFPDILEPAESFSHIILTKTAVKELPSSLDCLVGLQTLCLNLCSDLESLPNNIGNLSLLSKLDCSGCGKLTEIPNSIARLSSLRELSLQGTGIVNLSESIAHLSSLESLDVSDCRNLECIPPLPPLLKQLLAFDCPSIRRVMSNSRFKHPSNSKEGAFKLHFTNNEEQHPSAHSNIVADARFRITQNSYGSVFYCFPGSVVPDWFPYRCEGHSVTVDKDSLKWCNDHRLLGFALCVVLRLEGTDDTKYKSGEFRYTLTFKSDGRTHILPNHDQLNNRFYWKGRTRYVGRDHTFLWKYYLMDSGNIDNRIFQSHNFTFEISKRSHRLSSIGSGPEVKECGICPLYTNEKDDNGDIDDYSRLSKNAVGRGNV* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0565 1082 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 482 - -
Lja3g0565 1082 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 733 833 - -
Lja3g0565 1082 Gene3D - 105 198 IPR042197 -
Lja3g0565 1082 Gene3D Ribonuclease Inhibitor 567 699 IPR032675 -
Lja3g0565 1082 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 733 833 IPR044974 GO:0006952
Lja3g0565 1082 SUPERFAMILY "Winged helix" DNA-binding domain 185 289 IPR036390 -
Lja3g0565 1082 SUPERFAMILY L domain-like 267 487 - -
Lja3g0565 1082 Pfam C-JID domain 908 1059 IPR045344 -
Lja3g0565 1082 SUPERFAMILY L domain-like 572 866 - -
Lja3g0565 1082 Gene3D Ribonuclease Inhibitor 288 493 IPR032675 -
Lja3g0565 1082 Gene3D Ribonuclease Inhibitor 700 877 IPR032675 -
Lja3g0565 1082 PRINTS Disease resistance protein signature 54 68 - -
Lja3g0565 1082 PRINTS Disease resistance protein signature 394 410 - -
Lja3g0565 1082 PRINTS Disease resistance protein signature 149 163 - -
Lja3g0565 1082 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 482 IPR044974 GO:0006952
Lja3g0565 1082 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 578 668 IPR044974 GO:0006952
Lja3g0565 1082 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 578 668 - -
Lja3g0565 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Lja3g0565 1082 Pfam Leucine Rich Repeat 375 394 IPR011713 -
Lja3g0565 1082 Gene3D - 1 104 IPR027417 -
Lja3g0565 1082 Pfam NB-ARC domain 1 174 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0565 Lja-Chr3 5570737 5576263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0565 653 832 WRKY Transcription Factor Family AT5G45050 29.279 1.68e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0565 - - ccaj:109803335 1147.5