Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0558 ATGATGGCAACAGTATTCAACCTGAGAACACCAATTATTGCCATCCTCACGTTTCTTGGCTTCATGGCCCTGTCCCTTTCCACCACAGCAAGAGCACAATCCCCAAATTACGTTGGTGATGACTGCCAAAACTCAACAGAACAAGCCCTGACCACTGCATACCAAACCAACCTTAACAAAGTCCTCTCATGGCTCTCCTCTGATGCAGCCACAAGCAAGGGTTATAACCACACCACCATAGGAACTAACACGTCTGACACTGTCTATGGCTTCTATGATTGCAGGGCTGATGTCACAGAATCATTCTGCCAGTTCTGTGTCTCGACTGCAGCATCAGAAATCCCTCAACGCTGTCCTAACAGATCCTCCGCTGTGATATGGTACAACTTCTGCATTCTCAGGTACTCGAACCGTGATTTCTTTGGGAAACTCACAACAACCCCGTCATGGGAAATTTTGGGGTCCAAGAACATCACTGGCTCACAAGAACTTCAGAAAGCTGAGAAATTTATGCAGAGTTTGATAAGTGAAGCTAGTGTGGAGAGCAACAAGTTGTTTGCAATGGGGGAGTTCAATTTGAACAGTTCTGAGGAGAGGTATGGGTTGGTGCAGTGCAGCAGAGACATTTCTGCTAACTATTGCAGCCTGTGTTTGGAAACTATGCTAGACAAAGTTCCTCAGTGCTGTGGGACAGAGGTTGGATGGCAGGTTTTGGCTCCAAGCTGTCTGATAAAGTATGATGATTACATATTCTACCAGATTACTAATCAAACATCTCCTTTGCCTGCTCCAGGTACATGTAGCAGATTAATTAGAGGTACAAGCAATTTGTCAAAAACCTGTACCATTACCATAGTAAGTGTGTTGGTGGTACTAGCTCTACTAAGTTTCTGTATGTACTACTCATGGAGATGGTATAAGTCTAAGAAAGAACATGGTCTATTATCAGAGACAATTCCTATATCTTTTCATGGCCATCTTCAAGGAGAGGAAGATTCACTGAATACAAACCTTCCTACAATCCCTTTAATTTGGATTCGACAGAGCACTAATAACTTTGATGAGTCATGTAAATTAGGAGAAGGTGGATTTGGCCCAGTTTACATGGGTAATTTGGAAGATGGAACAGAAATTGCTGGTGTAGAGGAGTTCAAGAATGAAATAATTTTCATAGCAAAACTACAACATAGGAACCTTGTGAAACTCTTGGGTTGCTGCATTGAGGAAAATGAAAAGCTGCTAGTATATGAGTACATGCCAAATTCAAGTCTTGACTCTCACCTATTCAATGAAGAGAAACGAAAGCAACTAGATTGGAAATTACGACTGAGCATAATTAATGGAATTGCAAAAGGACTTCTTTACCTACATGAAGACTCTAGGCTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATCAAGAGATGAATCCAAAAATTTCAGATTTTGGATTGGCCAGGATATTTGTAAAAGGCCAGAGTCAGGAAAATACAAACAGAGTTGTGGGTACCTATGGATACATGGCTCCAGAATATGCTATGGAAGGGTTATATTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTATTTTGTTAGAAATCATTTGTGGGAAAAGGAATGGTGAATTCTATCTTTCAGAACATGGTCAGAGTCTTCTTATGTATAGTTGGAGACTTTGGTGTGAAGGAAAAAGTTTGGAACTATTAGATCCAATACTGAAAACAACATGCATAGCCAATGAAGTTATGAAATGCATGCACATTGGATTATTGTGTGTACAACAAGATGCAGCAGATAGACCAACCATGTCCACGGTTGTTGTCATGCTGGCGAGTGACACAATGGCACTTCCCAACCCAAATCATCCAGCATTTTCTGTTGGAAGAAAGATCAAGGATGAAGAATCAAGATCAAAAGCTTTCAAGGATCATTCTATTAATGAAATAACAGTATCAAATGTTTTAGCCAGGTAG 1986 0.4068 MMATVFNLRTPIIAILTFLGFMALSLSTTARAQSPNYVGDDCQNSTEQALTTAYQTNLNKVLSWLSSDAATSKGYNHTTIGTNTSDTVYGFYDCRADVTESFCQFCVSTAASEIPQRCPNRSSAVIWYNFCILRYSNRDFFGKLTTTPSWEILGSKNITGSQELQKAEKFMQSLISEASVESNKLFAMGEFNLNSSEERYGLVQCSRDISANYCSLCLETMLDKVPQCCGTEVGWQVLAPSCLIKYDDYIFYQITNQTSPLPAPGTCSRLIRGTSNLSKTCTITIVSVLVVLALLSFCMYYSWRWYKSKKEHGLLSETIPISFHGHLQGEEDSLNTNLPTIPLIWIRQSTNNFDESCKLGEGGFGPVYMGNLEDGTEIAGVEEFKNEIIFIAKLQHRNLVKLLGCCIEENEKLLVYEYMPNSSLDSHLFNEEKRKQLDWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARIFVKGQSQENTNRVVGTYGYMAPEYAMEGLYSVKSDVFSFGVILLEIICGKRNGEFYLSEHGQSLLMYSWRLWCEGKSLELLDPILKTTCIANEVMKCMHIGLLCVQQDAADRPTMSTVVVMLASDTMALPNPNHPAFSVGRKIKDEESRSKAFKDHSINEITVSNVLAR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0558 661 PANTHER PROTEIN KINASE DOMAIN 27 658 - -
Lja3g0558 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 658 - -
Lja3g0558 661 SMART serkin_6 353 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0558 661 Pfam Salt stress response/antifungal 165 249 IPR002902 -
Lja3g0558 661 Pfam Salt stress response/antifungal 42 137 IPR002902 -
Lja3g0558 661 ProSiteProfiles Gnk2-homologous domain profile. 146 251 IPR002902 -
Lja3g0558 661 Gene3D Transferase(Phosphotransferase) domain 1 419 623 - -
Lja3g0558 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Lja3g0558 661 SUPERFAMILY Protein kinase-like (PK-like) 336 629 IPR011009 -
Lja3g0558 661 Gene3D - 151 251 IPR038408 -
Lja3g0558 661 Gene3D - 36 140 IPR038408 -
Lja3g0558 661 Pfam Domain of unknown function (DUF3403) 616 661 IPR021820 GO:0004674
Lja3g0558 661 Gene3D Phosphorylase Kinase; domain 1 322 418 - -
Lja3g0558 661 ProSiteProfiles Protein kinase domain profile. 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0558 661 Pfam Protein tyrosine and serine/threonine kinase 366 613 IPR001245 GO:0004672|GO:0006468
Lja3g0558 661 CDD STKc_IRAK 359 614 - -
Lja3g0558 661 ProSiteProfiles Gnk2-homologous domain profile. 36 140 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0558 Lja-Chr3 5514014 5519025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0558 13 649 Receptor kinase-like Gene Family AT4G05200 42.492 2.46e-168 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g0558 PK_Tyr_Ser-Thr 2.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0558 - - ahf:112718031 872.463