Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0553 ATGCCTTTCATGCCTCCTTCTCCTTCACCTTCACCTTCTCCTTCTCCTTCTCATACTCCCTCTCACACACTCCTTCACCACCATCATCACCCACCACCTCCAATCAAAAGCAACTCCTCCTCACCCTCCCCGGCAGTAAACTTCAGCCCACCAATCATAGCAATGGTGGTCGTCGTCGCCGCCGCCTTCGTCATCGTCACCTACTGCCGCCTCATAGCCCGCCACCTCAAACCCCCACTCAAACGCCTCATCCGCCGCTTCAACCGCCGCAGATTCCTCCCCTCCTCCGCCGGCGACGTCGACTCCCTCCAATACGACTCAACCACCCTCGACGGCCCGCACCTTTTCTCCCCCTACGGCCTCGACGAGTCAGTCATCAAGACCATCCCCTTCTCCCTCTACACCCCCAAACTACACATCGAAGAGTCTCGCCGCAGCGACTGCGCCGTTTGCCTCCTCGATTTCGAACACCAAGACTACGTTCGCACTCTCCCAATTTGCTCTCACACCTTCCATCTCGATTGCATCGACGCTTGGCTTCGTTCTCACGCTAACTGCCCTCTCTGCCGCGCCGGCGTGCTCTGTTCTGAATCACCCTTCACACCTCTCATGGCGGCCAGGATCCGACCCGACCTCGACGACCACGCTATTCTCCACTTCGACCCGACCCGATCAGACCTCGAAGCTTATTCCCTCTCTCCCTTACCGGAGATCACACCCTGCATCGACGACCACTCTCCCAGAAGAATCAACGACGATCATCACCACCGGAGGGACAATTTTCTTCTGAAGCGATCCTATTCGTTTGGATTTGAACGGAGCTTGGCTTCTGAGAGGATGGTGGTGGATACTGCCACGGCTTCGCCGTGGCGCTACCGGAGAGGGAGTAGCAGCAGCTTCTGGAGCAAGAGACCTTCACCGTTCGGGTCGTTGGGGAAGACGAGGGTGTTTTCGTTCAGATACTACAGGGGGATGAAATCGCCGTTTTTCCGGCGGAGGGGATTCTTCCCGTTCTCGGAGTCGAGCGTGAGATACGCCGGCGGCGGCGGAGGTAGCTCGTCGCGGCGGAGCAAGTCCATAGCGAGCCCGATGTTCTTGAGGTCGTCGGCGACGGCGATGACGGCGGGTGTTTTCTCGTCGAGCCGGCTGAGGTGCGGTGATCCCGAGGCGCTGCTGTCGCCGGAGAGGTTTAGCAGACGGTGA 1203 0.5885 MPFMPPSPSPSPSPSPSHTPSHTLLHHHHHPPPPIKSNSSSPSPAVNFSPPIIAMVVVVAAAFVIVTYCRLIARHLKPPLKRLIRRFNRRRFLPSSAGDVDSLQYDSTTLDGPHLFSPYGLDESVIKTIPFSLYTPKLHIEESRRSDCAVCLLDFEHQDYVRTLPICSHTFHLDCIDAWLRSHANCPLCRAGVLCSESPFTPLMAARIRPDLDDHAILHFDPTRSDLEAYSLSPLPEITPCIDDHSPRRINDDHHHRRDNFLLKRSYSFGFERSLASERMVVDTATASPWRYRRGSSSSFWSKRPSPFGSLGKTRVFSFRYYRGMKSPFFRRRGFFPFSESSVRYAGGGGGSSSRRSKSIASPMFLRSSATAMTAGVFSSSRLRCGDPEALLSPERFSRR* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0553 400 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 371 - -
Lja3g0553 400 SMART ring_2 148 189 IPR001841 -
Lja3g0553 400 Pfam Ring finger domain 147 190 IPR001841 -
Lja3g0553 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 194 IPR013083 -
Lja3g0553 400 MobiDBLite consensus disorder prediction 1 42 - -
Lja3g0553 400 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 371 IPR044675 -
Lja3g0553 400 MobiDBLite consensus disorder prediction 1 17 - -
Lja3g0553 400 CDD RING-H2_PA-TM-RING 147 190 - -
Lja3g0553 400 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Lja3g0553 400 SUPERFAMILY RING/U-box 125 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0553 Lja-Chr3 5467114 5469591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0553 39 400 C3H Transcription Factor Family AT3G18930 49.123 6.17e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0553 - K19041 gmx:100795347 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0553 3 5467114 5469591 Lja3g0553 3 5467114 5469591 ECH