Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0541 ATGGACGATTACGCTAGCACCGATGAGGAGTATCGTTACTCCGATCAGGATGACTCCCTTGACGACGACGACGACGACGCCTTCGAAAATGACGGCCAAGATTATGGCCTTCTCTCTTCCAAGGCTCCCACTAGTCAGGTGATAACTAAGGAGTCATTGCTAGCTGCACAGAGGGATGATTTGCGCAGAGTGATGGAGATGCTTTCGGTGAGGGAGCAACATGCGCGTACGCTGCTTATTTATCATCGTTGGGATGTGGAGAAATTGTTTGCAGTGTATGTAGACAGGGGGAAAGAATTTCTGTTTCGTGAAGCTGGTGTTAGTGTGGATGAACATCGTGACTCGGTGGTTCATGCTTCTGTGATGTGCGAAATCTGCATCGAGGATGTTCCTAGTGATGAAGCGACCAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTTGGACAGAGCACTTTATTGTTAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCGCACAAATGTAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAAAAAGCACCCTGATTTGGCGGAGAAATATGAGCGGTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGGGTTAAATGGTGTCCAAGCGTGCCTCATTGTGGGAATGCAGTTCGCACTGAGGATGATAACTTGTGTGAGGTAGAATGTTCATGTGGCGAACAATTTTGTTTTAATTGCTTGTCAGAAGCACACTCCCCCTGTTCATGCTTGATGTGGGAGCTTTGGACTAAGAAATGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATATGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGATCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAACAAGAAAAGACAGCTGAACGGGCAAAAAGGGATCTTTATAGGTATATGCACTATCATAACCGATATAAAGCTCATACAGACTCCTTCAAGCTTGAAAGTAAACTAAAAGAGAACATACAAGGGAAGATTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCGTATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGATGAAATGTCAGAAGCTCAGAGGGAAATAAAACAGAACCTATTTGAGGATCAACAGCAGCAGCTTGAGGGCAACGTTGAAAAACTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTCAAGATGCAAAGGTGATGGAGTTAAGGATGCAAATAATCAATGTTTCAACAATTATTGACAAACTTTGTCAGAAAATGTATGATTGCATCGAGAATGATTTATTGGGCTCTCTCCATCTTGGTGTTCACAGTATAGCTCCCTATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTCTCAGATTGTTGGAACAATAAAGCCAATAATACTGGTAAGTGTTTATTGTACTTTTATTTATATTGGATTTTTGATAGACTTTGA 1653 0.4168 MDDYASTDEEYRYSDQDDSLDDDDDDAFENDGQDYGLLSSKAPTSQVITKESLLAAQRDDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDRGKEFLFREAGVSVDEHRDSVVHASVMCEICIEDVPSDEATRMDCGHCFCNSCWTEHFIVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSKKHPDLAEKYERFLLESYIEDNKRVKWCPSVPHCGNAVRTEDDNLCEVECSCGEQFCFNCLSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKENIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMSEAQREIKQNLFEDQQQQLEGNVEKLSKILEEPFETFQDAKVMELRMQIINVSTIIDKLCQKMYDCIENDLLGSLHLGVHSIAPYKSKGIERASELSDCWNNKANNTGKCLLYFYLYWIFDRL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0541 550 SUPERFAMILY RING/U-box 121 206 - -
Lja3g0541 550 Gene3D - 252 499 - -
Lja3g0541 550 MobiDBLite consensus disorder prediction 14 31 - -
Lja3g0541 550 SUPERFAMILY RING/U-box 194 262 - -
Lja3g0541 550 Pfam Ariadne domain 333 537 IPR045840 -
Lja3g0541 550 ProSiteProfiles Zinc finger RING-type profile. 123 171 IPR001841 -
Lja3g0541 550 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED 7 511 - -
Lja3g0541 550 MobiDBLite consensus disorder prediction 1 41 - -
Lja3g0541 550 ProSiteProfiles TRIAD supradomain profile. 119 333 IPR044066 -
Lja3g0541 550 SMART ibrneu5 264 329 IPR002867 -
Lja3g0541 550 SMART ibrneu5 194 256 IPR002867 -
Lja3g0541 550 Pfam IBR domain, a half RING-finger domain 194 256 IPR002867 -
Lja3g0541 550 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 511 IPR031127 GO:0004842|GO:0016567
Lja3g0541 550 SUPERFAMILY RING/U-box 264 321 - -
Lja3g0541 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 208 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0541 Lja-Chr3 5401127 5404832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0541 65 530 ARIADNE family AT2G16090 72.246 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0541 K11968 - gmx:100783343 963.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0541 3 5401127 5404832 Lja3g0541 3 5401127 5404832 ECH