Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0517 ATGGCTTCCGGAAAAACCGACTCCACCCCACTCGTGAGCTTGAAGGTCATCGTCCTCGCCGGAATTTTCCTCATCGTTGTGGTGATAATCGTGCTCCTGATCTTCCTCTGCTTCCGCGGAACCTGCAAGAAGAAGCGCAAGTTGCTTGTCAAGCACAGCTCCGGCACTATCCCACTGGTTTCCAAGGAGATCGCAGTGGTCAGAGCCTTGGATCTCGCTCTCAACCAGACGCGGATTGAGGTTGAAGGTGATGCTGACGTCATGGATCCGAAGATCAAGGTGGAGGTTGGGAGTTTGGGGAGGAAGAGTGACGCTTCCGGTTGTGGTGGTGGTGGTGGTACGCTGGTGGAGGATCCTGATATAGGGTGGGGAAGGTGGTATACGCTGAATGAAGTGGAGCTTGCAACGCGTGGATTTGCAGAGAGGAATGTGATTGGAGAAGGAGGGTATGGGGTTGTGTACAGAGGAGTTTTGCAAGATGGTTCTGTGGTGGCTGTCAAGAATCTTCACAACAACAAGGGACAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGGAAAGTAAGGCATAAGAATCTGGTTCGTTTAGTCGGATATTGTGCAGAAGGAGCTCGAAGGATGCTTGTTTATGAATATGTTGACAATGGAAATTTGGAGCAGTGGCTGCATGGTGATGTAGGACCTGTTAGCCCCTTAACATGGGATGTCCGAATGAAGATTGCACTTGGGACTGCAAAAGGGCTGGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATGTAAAATCCAGTAACATTCTTTTAGATAAAAAGTGGAATGCTAAAGTATCAGATTTTGGACTTGCCAAGCTCTTAGGATCTGAGAAAAGCCATGTAACTACTCGTGTAATGGGAACATTTGGATATGTTTCACCTGAGTACGCAAGCACGGGGATGCTGAATGAGCGCAGCGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATTACAGGAAGAAGCCCCATTGATTATTCAAGAGCACCTGCAGAGATGAATTTGGTTGATTGGTTCAAAGCAATGGTAGCAAGTCGCCGCAGTGATGAACTAGTTGATCCTTTGATTGAGATTAAGCCCTCTCCACGATCTCTGAAGAGAGCTCTACTGGTTTGTCTGCGTTGTATAGACTTGGATGTCATTAAGCGGCCGAAAATGGGTCAAATTGTTCATATGCTTGAGTCAGATGATTTCCCCTTTCGTTCTGAGCTGCGTACAATTAGGGACAAAGATCATGTGCCTTCTCATGCAGATGTTTCCATGAAAGTTCCACCAAAGGATGCAGAATCAACACGAAGATGA 1353 0.4715 MASGKTDSTPLVSLKVIVLAGIFLIVVVIIVLLIFLCFRGTCKKKRKLLVKHSSGTIPLVSKEIAVVRALDLALNQTRIEVEGDADVMDPKIKVEVGSLGRKSDASGCGGGGGTLVEDPDIGWGRWYTLNEVELATRGFAERNVIGEGGYGVVYRGVLQDGSVVAVKNLHNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDVRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGSEKSHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSRAPAEMNLVDWFKAMVASRRSDELVDPLIEIKPSPRSLKRALLVCLRCIDLDVIKRPKMGQIVHMLESDDFPFRSELRTIRDKDHVPSHADVSMKVPPKDAESTRR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0517 450 PANTHER OS01G0323000 PROTEIN 6 444 - -
Lja3g0517 450 Pfam Protein kinase domain 141 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0517 450 SMART serkin_6 139 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0517 450 CDD STKc_IRAK 145 411 - -
Lja3g0517 450 ProSitePatterns Protein kinases ATP-binding region signature. 145 167 IPR017441 GO:0005524
Lja3g0517 450 PANTHER RECEPTOR-LIKE KINASE 6 444 - -
Lja3g0517 450 MobiDBLite consensus disorder prediction 431 450 - -
Lja3g0517 450 Gene3D Transferase(Phosphotransferase) domain 1 215 422 - -
Lja3g0517 450 ProSiteProfiles Protein kinase domain profile. 139 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0517 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Lja3g0517 450 Gene3D Phosphorylase Kinase; domain 1 123 214 - -
Lja3g0517 450 SUPERFAMILY Protein kinase-like (PK-like) 122 418 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0517 Lja-Chr3 5191724 5195126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0517 18 413 Trihelix Transcription Factor Family AT1G70460 41.769 1.53e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja3g0517 Pkinase 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0517 - - gmx:100305442 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0517 3 5191724 5195126 Lja3g0517 3 5191724 5195126 ECH
Lja3g0517 3 5191724 5195126 Lja2g0447 2 4079895 4083366 ECH