Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0511 ATGCTTCTTTCATGTCAAAAATTCTACAACCTTTACCTTCCATGCTCCTCCTCCTCCTCCAACTTCTCCAACCCATCATCCACCATTGTCAGTTGCCAAAACCAAAACGAGCACCACCCCATTATCCGCACACACAACTCCAAGTCCTCCTCCTTTCTCCTCCACAACCTTTCCCTCAAGGAAGACGACGATCACCCTTCACTCTCTGAGCTTCAAGACACAACACCCCATGAAGAAAAGGTGAAGCTCTTGGAACTTTCACTCGTTAGGAAGAGAACCCCTCGATTCCCTGGCTCAATCTATGCTCAATCTCCCAGTGACCCTGATGTGGGTTCTTCTCTTCCCCCTCTGCGTACTCTGTTTCGGTCAAGTGATGGTGAAGATAAGGGTGAGGAAGAGGAGATGATCATGCGCGCGCTTCAGATTCGTAGGAAGGTTACAGAAGAGATTTTCAAGGAAGTGATGGAGAAAAAGGGGAAATTTGGAATCACGTATGTCAACAATTTGACTCGCAGGTTGGGTGGTTTCATTGATTTCATCATGATTGAAGCTGCTAATTTGAAAAGGTTGCCGGAGTATTCTCAATCCACCTTCAATCTACGCGCTATAACCGTCATTGATGACTCTCAGGTTGTGTCACTTGTCAGATGGTTGAAGCATAATGCAATGTCATATCCTCAGATAGCAAAGCTCATTTTGATGTCAAGAGGAAACCTTGAGTTGATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGCTTGTGAAAGGAGACTTTATCGGGGAAGCAATGTTGAAGGCTGGAGATAATATTTTGCAGCGCAGCAATGAGGAGCTGGATGAGATTGTTGGGTATTTAGAATCTAATGGAGTCAGGAGGGATTGGAGGGGTTATGTCATGAGTAGATGTCCTCAATTGTTGTCTTACAGCATAGAAGAAGTGAAGGCACGTGTCCATTTCTATCGAGATATGGGTTTGGATGAGAAGGATTTTGGCACAATGGTTTTTGAATTTCCTAAAGCACTTGGTTTCTATACTCTGGAGGAAATGAACCAAAAGGTTGATTACTTAAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGCAAATTGCTTGCAGTTAGACCACAACTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTCTACTATTATGGGATCACCCGAGATGGTATGAAGAGAATGCTTACCCTTAAACCAATGGTCTTTTGTGCTGACTTGCAGATGACTATTGTGCCAAAGGTACAATTTTTTCAGGACATAGGGGTTCGAAATGAAGCAATTGGCAACATGCTTGTAAAATTTCCTACTCTACTCACTTACAGCCTGCTCAAGAAGATTAGGCCAGTGGTCATATTCTTGTTAACCAAGGCTGGAGTCAGGGACAAAGATATTGGCAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGACGTAAATGTGAAATATTTTTTGTCTCTTGGCATACGCCTTCCGCAATTGGGTGAAATGATTGCGGATTTTCCAATGCTGCTCAGATACAATATAGATGTCCTTCGACCTAAGTATAGTTATTTGCGGAGAACCATGGTCCGGACTTTGCAAGATCTCATCGAGTTTCCAAGGTTTTTAAGCTATTCTCTTGATGGCCGAATTATCCCAAGGCACAAGGTTCTGGTGGAGAATCAGATTAATGTGAAGCTAAGATACATGTTGGCTTGCAGTGATGAAGAGTTTAACAAAATGGTCAAGACTATGGTTAGAAAACGCCAGAAATTTCAATCTTCTGTCATGGAGGAGGATGCTAATCATCCACAATCAGTTATTACCAGTGAGATTACAACACTCGAGACATGA 1887 0.4298 MLLSCQKFYNLYLPCSSSSSNFSNPSSTIVSCQNQNEHHPIIRTHNSKSSSFLLHNLSLKEDDDHPSLSELQDTTPHEEKVKLLELSLVRKRTPRFPGSIYAQSPSDPDVGSSLPPLRTLFRSSDGEDKGEEEEMIMRALQIRRKVTEEIFKEVMEKKGKFGITYVNNLTRRLGGFIDFIMIEAANLKRLPEYSQSTFNLRAITVIDDSQVVSLVRWLKHNAMSYPQIAKLILMSRGNLELIRNRVEWLKSVLVKGDFIGEAMLKAGDNILQRSNEELDEIVGYLESNGVRRDWRGYVMSRCPQLLSYSIEEVKARVHFYRDMGLDEKDFGTMVFEFPKALGFYTLEEMNQKVDYLKEFGLESKDVGKLLAVRPQLMACSIEEQWKPLVKYLYYYGITRDGMKRMLTLKPMVFCADLQMTIVPKVQFFQDIGVRNEAIGNMLVKFPTLLTYSLLKKIRPVVIFLLTKAGVRDKDIGKVVALGPELLGCSIVHKLDVNVKYFLSLGIRLPQLGEMIADFPMLLRYNIDVLRPKYSYLRRTMVRTLQDLIEFPRFLSYSLDGRIIPRHKVLVENQINVKLRYMLACSDEEFNKMVKTMVRKRQKFQSSVMEEDANHPQSVITSEITTLET* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0511 628 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 61 613 - -
Lja3g0511 628 Pfam mTERF 240 416 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 Pfam mTERF 283 589 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 PANTHER CGI-12 PROTEIN-RELATED 61 613 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 Gene3D Transcription termination factor 3, mitochondrial 357 605 IPR038538 -
Lja3g0511 628 SMART mt_12 296 326 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 439 471 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 261 291 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 367 398 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 331 362 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 544 575 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 476 507 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 SMART mt_12 512 542 IPR003690 GO:0003690|GO:0006355
Lja3g0511 628 MobiDBLite consensus disorder prediction 97 129 - -
Lja3g0511 628 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja3g0511 mTERF 6.7e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0511 K15032 - zju:107426883 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0511 3 5159105 5162209 Lja3g0511 3 5159105 5162209 ECH