Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0509 ATGGCTTCTGCAGATGTTGAGTACCGTTGCTTCGTTGGTGGGCTCGCCTGGGCCACTGACAGCGAAGGCTTGGAGAAAGCTTTCTCTACCTATGGCGAAATTGTTGATTCGAAGGTTGTGAACGATCGTGAGACTGGAAGATCTAGGGGATTCGGATTCGTGACGTTCGCGTCGGAGCAGTCGATGAAGGATGCGATCGAGGGGATGAACGGCCAGGACATTGACGGCCGTAATGTTACCGTGAATGAAGCCCAGGCTCGCGGCCGTGGAGGCGGCGGCGGTGGTGGTGGATACGGCGGTGGTCGTCGTGAAGGTGGATACGGTGGTGGTGGTGGTGGTAGCCGTTATAGCGGTGGTGGCGGTGGAGGCTATGGTGGTAGCGGAGGAGGAGGATACGGCGGTCGTCGTGAAGGTGGTGGTGGTGGTTATGGTGGCAGTCGCGAAGGCGGCGGTGGATCTCGCTACTCTAGCGGTGGAAGCTGGAGGGATTAG 492 0.5894 MASADVEYRCFVGGLAWATDSEGLEKAFSTYGEIVDSKVVNDRETGRSRGFGFVTFASEQSMKDAIEGMNGQDIDGRNVTVNEAQARGRGGGGGGGGYGGGRREGGYGGGGGGSRYSGGGGGGYGGSGGGGYGGRREGGGGGYGGSREGGGGSRYSSGGSWRD* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0509 163 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Lja3g0509 163 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lja3g0509 163 MobiDBLite consensus disorder prediction 82 163 - -
Lja3g0509 163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lja3g0509 163 Gene3D - 2 107 IPR012677 -
Lja3g0509 163 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 162 - -
Lja3g0509 163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lja3g0509 163 PANTHER GEO13361P1-RELATED 1 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0509 Lja-Chr3 5138505 5139544 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0509 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 1.47e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0509 - K13195 ccaj:109800369 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0509 3 5138505 5139544 Lja3g0509 3 5138505 5139544 ECH