Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0507 ATGGCCGATGTTGAGTACCGTTGCTTCGTCGGTGGTCTTGCCTGGACCACCGATAGCCATACCCTTGAGCAAGCTTTCTCCTCCTACGGCGAAATCATTGATTCTAAGGTTGTCAACGATCGTGAGACTGGAAGGTCAAGGGGATTTGGATTCGTGACCTTCACTTCTGAGGAGGCTATGAGGAGCGCGATCGAGGGGATGAACGGCAATGAGCTTGACGGCCGTAACATCACTGTGAATGAAGCCCAGGCTCGCGGCGGAGGCGGCGGCGGTGGCGGTCGTGGAGGAGGTGGATATGGAGGCGGCGGCGGTCGTCGTGAAGGTGGATATGGCGGTGGCGGTGGATCTCGCGGCTATGGAGGCGGTGGCGGTGGATATGGAGGAGGAGGCGGCGGTGGTTATGGTGGTCGTCGTGAAGGTGGATATGGTGGTGATGGTGGTGGCTCCCGCTATGGCAGCGGCGGTGGTGGCGGCGGTGGAAACTGGAGGAGCTAG 495 0.602 MADVEYRCFVGGLAWTTDSHTLEQAFSSYGEIIDSKVVNDRETGRSRGFGFVTFTSEEAMRSAIEGMNGNELDGRNITVNEAQARGGGGGGGGRGGGGYGGGGGRREGGYGGGGGSRGYGGGGGGYGGGGGGGYGGRREGGYGGDGGGSRYGSGGGGGGGNWRS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0507 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Lja3g0507 164 PANTHER GEO13361P1-RELATED 2 163 - -
Lja3g0507 164 MobiDBLite consensus disorder prediction 81 104 - -
Lja3g0507 164 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
Lja3g0507 164 Gene3D - 2 101 IPR012677 -
Lja3g0507 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Lja3g0507 164 MobiDBLite consensus disorder prediction 121 164 - -
Lja3g0507 164 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 163 - -
Lja3g0507 164 SMART rrm1_1 7 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0507 Lja-Chr3 5124438 5125615 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0507 8 86 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 4.37e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0507 - K13195 lja:Lj0g3v0097489.1 153.295