Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0503 ATGGCCTCAAGCTCTCTCAGCAAACAAAAGCCTTGTGACTCAGCTTGGACACCAAAACAAAACAAGCTGTTTGAAAAGGCGCTTGCGAAATATGACAAGGACACCCCGGACCGGTGGCAGAATGTAGCCAAAGCAGTAGGTGGAAAATCGGTGGATGAAGTGAAGAAACACTATGAGATCCTCCTGGAGGATCTCAGACACATAGAGTCTGGCCATGTTCCCATTCCCAATTACAAGTCCACGCCAAGAAGCATCAATGTGGATGAAGAAGAGAGGCTTCTGAAGTATCTTAAGCTGAATTGA 303 0.4653 MASSSLSKQKPCDSAWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSVDEVKKHYEILLEDLRHIESGHVPIPNYKSTPRSINVDEEERLLKYLKLN* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0503 100 CDD SANT 15 62 IPR001005 -
Lja3g0503 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Lja3g0503 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Lja3g0503 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Lja3g0503 100 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Lja3g0503 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Lja3g0503 100 SMART sant 12 64 IPR001005 -
Lja3g0503 100 Gene3D - 9 75 - -
Lja3g0503 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0503 Lja-Chr3 5076151 5078010 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g0503 Myb_DNA-binding 6.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0503 - - gmx:100785292 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0503 3 5076151 5078010 Lja3g0503 3 5076151 5078010 ECH