Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0502 ATGTTGCACTGTCTCAACACTTCAGGGACTGTGGGAGGTGGAGGAGGAGGAGCTTGTTCCGACATGACAGTGCTGGAAAGGCAAAGGGTAAGCAGCAAGAAGTGGCAGCATGAGCAGGAGCATGAGAATCAAGGCTATTTTTGTGGTGGTGGTGCTGATTCTGCGCTTGGTGAGGTGGTGGCTCGCTCTGTGAAACCTGACCCGGGTTTTGAAAACGGGTGGCCTGAATTGGGAAAGTTTGTTGTTGCGGGATTCGGGTCTGGGTTTGATGCTAGCTCTGCAATTTCAAGGACTTGTAGCAATGGTGACTTGGTTTCTGCTACCAAGAAGATGATGGGTTCCGTGAGTGGGAAAGAAAGCTTGAAGAAGAGGAAAGCTGATAATAAGGCTCAGAATTCCAATTCCAAGGTTTTTGTGGAGAGTGATAGCAAAGACAAGAGGATCAAAGTGAGTGGTGAGGAAGGGGAATCCAAAACCACAGAGAAAACCAGCAACAAGAATACCAAGTCCTGCACAAACAGAAACAGCAGGGAAACTTCTGAGGATACTTCCAAGGAGAATTCAAAAGGGTCTGAGGTTCAGAACCAAAAGCCTGAATACATTCATGTCCGAGCACGTCGTGGTCAAGCCACGGATAGTCATAGCTTAGCTGAAAGGATTAGAAGGGAGAAAATTAGCGAGAGGATGAAGTATTTACAAGATTTAGTACCCGGTTGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTACGTTCAGTCTCTTCAACGACAAGTTGAGTTCCTGTCAATGAAATTAGCTGCTGTAAATCCAAGGCTTGACTTCAACATTGATGAATTGTTTGTCAAAGAGGTGTTTCCTGCTTGTGCTCAAAGTTTTCCATCCATAGGGATGCAATCAGACATGACCAACCACCCCGCATATCTACAATTCAATTCAGCACAACAACTTGTTTCCTATTGTGGTGGATTAGTAAACAACACAGAGATAATCCCTACGGATATGGGGGTTCGAAGGAACATGAATGTCCCTGTATCTATGCCTGAAACGTTTCTTGACTCATCATGTTTCACTCAAATTCTACCCTCCTTATCATGGGAAGGTGATTTCCAAAACCTCCAAAGTGTGGCTTTTGACCAAGGAAGATCATCATCCTTTCCTTCTCAGCCATTTACAGATTTGGTTGAAGCCAGTGACCTGAAGATGGAGATGTAA 1227 0.445 MLHCLNTSGTVGGGGGGACSDMTVLERQRVSSKKWQHEQEHENQGYFCGGGADSALGEVVARSVKPDPGFENGWPELGKFVVAGFGSGFDASSAISRTCSNGDLVSATKKMMGSVSGKESLKKRKADNKAQNSNSKVFVESDSKDKRIKVSGEEGESKTTEKTSNKNTKSCTNRNSRETSEDTSKENSKGSEVQNQKPEYIHVRARRGQATDSHSLAERIRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFVKEVFPACAQSFPSIGMQSDMTNHPAYLQFNSAQQLVSYCGGLVNNTEIIPTDMGVRRNMNVPVSMPETFLDSSCFTQILPSLSWEGDFQNLQSVAFDQGRSSSFPSQPFTDLVEASDLKMEM* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0502 408 CDD bHLH_AtBPE_like 199 284 - -
Lja3g0502 408 Pfam Helix-loop-helix DNA-binding domain 213 260 IPR011598 GO:0046983
Lja3g0502 408 Gene3D - 206 280 IPR036638 GO:0046983
Lja3g0502 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Lja3g0502 408 SMART finulus 215 265 IPR011598 GO:0046983
Lja3g0502 408 MobiDBLite consensus disorder prediction 199 215 - -
Lja3g0502 408 MobiDBLite consensus disorder prediction 139 163 - -
Lja3g0502 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 278 IPR036638 GO:0046983
Lja3g0502 408 MobiDBLite consensus disorder prediction 116 130 - -
Lja3g0502 408 MobiDBLite consensus disorder prediction 113 215 - -
Lja3g0502 408 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 37 387 - -
Lja3g0502 408 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 387 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0502 Lja-Chr3 5054360 5057558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0502 8 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.299 1.76e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g0502 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0502 - - gmx:100794256 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0502 3 5054360 5057558 Lja3g0502 3 5054360 5057558 ECH
Lja3g0502 3 5054360 5057558 Lja2g0443 2 4062992 4064328 ECH