Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0478 ATGGCTTCTTCAAGCGGAACATCTTCAGGGTCATCTCTGCTTCAGAACTCTGGTTCTGAAGAGGACTTGCAGGCTGTGATGGACCAGAGGAAGAGGAAGAGGATGATCTCGAACCGCGAATCTGCGCGGCGATCTCGAATGAGGAAGCAGAAGCACTTGGATGATCTGGCTTCCCAAGTGACTCAGCTCAGGAAGGAGAATCAGCAGATTATCACAAGTGTTAACATCACCACTCAGCAGTACTTGAGTGTGGAGGCTGAAAATTCAGTGCTGAGGGCTCAGATGGGAGAGTTATCAAACAGGTTAGAGTCCTTGAACGAGATCATTGAGGTATTGAATGCCAACAGTGCAGCTTTTGGAACCACTTTCACTGAGCCAAGTAATGGGTTCTTCTTCAACCCATTGAGTATGTCCTATCTGAACCAGCAGATTATGCCTTCTGCAGACATGTTGCAGTGTTGA 462 0.4762 MASSSGTSSGSSLLQNSGSEEDLQAVMDQRKRKRMISNRESARRSRMRKQKHLDDLASQVTQLRKENQQIITSVNITTQQYLSVEAENSVLRAQMGELSNRLESLNEIIEVLNANSAAFGTTFTEPSNGFFFNPLSMSYLNQQIMPSADMLQC* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0478 153 Gene3D - 28 83 - -
Lja3g0478 153 PANTHER BZIP TRANSCRIPTION FACTOR 1 152 - -
Lja3g0478 153 Coils Coil 88 115 - -
Lja3g0478 153 Pfam bZIP transcription factor 30 76 IPR004827 GO:0003700|GO:0006355
Lja3g0478 153 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Lja3g0478 153 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Lja3g0478 153 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Lja3g0478 153 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g0478 153 SUPERFAMILY Leucine zipper domain 30 82 IPR046347 GO:0003700|GO:0006355
Lja3g0478 153 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 152 - -
Lja3g0478 153 MobiDBLite consensus disorder prediction 1 51 - -
Lja3g0478 153 MobiDBLite consensus disorder prediction 24 51 - -
Lja3g0478 153 Coils Coil 46 66 - -
Lja3g0478 153 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0478 Lja-Chr3 4813818 4815334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0478 24 151 bZIP Transcription Factor Family AT4G34590 56.934 6.30e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g0478 bZIP_1 5.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0478 K25786 - gmx:100101862 223.787