Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0477 ATGATGGAAAAGCGAGACTTTTCTGAATTCCTATCAGAGCTAATAGTGCTAAGCAATGAGGTTGCTTCTTTTGCCAAGAATCCTGAAATTGAGATAGATGCTTTTGATGAGTTTGCTATGCTCGTTGAGAAATTCGCACCTATCTTCAATGATTTGAGGGACAAAAGCACAATCATGGACAAGCCAGCTATTAGAAAATCGTTGGAATCAATTGAGAATGAGCTTAACCGTGCTAAAGCTTTGATCAGAAGTCCCTATTTGAAAGAGCCTGTTAAACAAATTGAGGACATAACTCGTGATCTTGGTCGATCATTTGGCCTGCTTATTGTGGCTAGCCTTGAAGTGTCCACAGATTTTAGAGAAAAGATTGGTGTATTGCAAAAGCAGTTGATGAATGCAAGATTTGGTGGATATAATACTAGTCTAACTTCAAGTCCAGTGTCAAATTTTGTCAGGGATGTGAAGGTGGAAGGGGAAATAGAAGAGGAAATAGTTAATGTCATTGTCACCCTTGAGGATGTTGTGCTGCAACTTAAGAATGGTAGTGCTGAAGAATTTGCTGTTGTACTTATGAGACTAAAGAAGTTAATCAGGGATGGACAACTGGATAGTGGTTTAATTAATGAGAATTTTATTGTTTGTGTTCTTTTTAATCGTCTAAGTTCATGTAAGGCAGAAGATAGGCTCACAGTCATTCAATTGCTACGAAGTATCGCCTTGGGAAATGATGAGTCAAAGGAGAAGATGGCAAATATTGAGTTTTTATCAGCATTGGTGAAGTCTCTAATAAGGGGTGAAGAAGAGAGGAGGGAAACAGTGGGACTGTTGCTAGAACTATCTGACCTTGCCGCAGTTAGACGTCAGATTGGAAGAATTAAGGGGTGCATTCTTATGTTAACTTCTATCCTGAATGGAATTGACCCTGTTGCTTCACATGATGCAGCAAAGTTATTGGATATATTATCCAGTAATTCTCAAAATGCACTTCATATGGCTGCAGCTGGTTACTTTAGGCCACTAGTGCATTATTTGGAGAAAGGATCTGACATGAACAAAATCCTTATGGCAACATCACTTTCTAGGTTGGTTCTCACTGATCACTGCAAACTTTCCCTTGGACAAGAGGGGGCAGTTGAATCCCTTGTCAAAATGTTTAACTCAGGGAAGCTTGAGTCCAAGTTATCTGCTCTAAATGCATTGCAAAACCTTTCGAGCTTGACCGAAAATGTGCAACGTCTGGTCAAAACTGGAATTGTAGGATATCTGCTGCAACTCCTTTTCTCTGTAACTTCTGTGCTCATGACTTTGCGGGAGCCTGCATCAGCTATGCTCGCAAGAATTGCTCAGTCAGAATCCTTTCTTGTAAACCAAGACGCGGCGCAGCAAATGCTTTCACTTTTGAGTCTTAACAACAGCAAGGTAATTCAAGGTCATCTATTAGAAGCTCTAGACAGCATTGCGTCCCATCCTGGTGCTTCTAAAGTGAGAAGAAAAATGAAGGAAAAAGGTGCCCTTCAGCTAATTTTACCCCTTCTGAAGGAAACTAAAATAAGGAGCAAGGCCTTGAGTTTGCTATATACTCTCTCCAAAGATCTAACAGAAGAGTTTAGTGAACATCTTGATCAAACTCATCTTCTCAACATTGTTAACATTGTCATATCAACAACATCAGATAATGAAAAGGCTAATGCTGTTGGCATACTGAGTAATCTTCCGGTTAACGATAAGAAAGTGACAGATATGCTAAAGAGAGCAAATTTGTTGCCAATGTTGGTACACATTATGGATTCAAGCACTGGAAGTAACTCACTCACAAGAAGTATCATAGCTGAGAGTATTGCAGGTATTGTAATCCGGTTCACGTGTGCCTCTGACAAGAAACTACAACTTCTTTCAGCAGAGCAAGGGGTGATTCCTTTGCTTGTAAAAGTTCTCTCAGGTGGTTCAACAATCACAAAATTTAGAGCTGCTACCTCTCTGGCTCAACTATCACAAAATTCTCTACCTCTCAGGAGGTCTTGGAAGTCAAGGTGGTTGTGTGCTTCTCACTCAGTTAATAATGCATATTGTGAAGTTCATGATGGCTATTGCTTTGTGAACAGCACTTTTTGTCTGATTAAAGCAGGTGCTGTTTCTCCACTTATCCAAATATTGGTAGATAAGGATGAGGAAGCAGTGGAAGCTTCTCTGAGTGCCCTTTCAACTCTCTTGCAGGATGAAATTTGGGAAGGAGGTGTGAAATGCATAGCTGAATTGTCAGGAGTAGACCCTATTGTGAAAATTTTAGAAACTGGTAATTTGAAGGTTCAAGAAAAAGCACTGTGGATGTTGGAGAGAATATTCAGGGTTGATGAGTACAGAGTAAAATATGGTGAATCTGCTGAGGCAGTTCTTATTGATCTGGCACAGAAGAATGATTCTGGATTGAAGCCAACAGTTGCAAAAGTTTTGGCATTGTTGGAGCTCCTGCAAGCTCAATCTAGTTATTTCTGA 2493 0.4003 MMEKRDFSEFLSELIVLSNEVASFAKNPEIEIDAFDEFAMLVEKFAPIFNDLRDKSTIMDKPAIRKSLESIENELNRAKALIRSPYLKEPVKQIEDITRDLGRSFGLLIVASLEVSTDFREKIGVLQKQLMNARFGGYNTSLTSSPVSNFVRDVKVEGEIEEEIVNVIVTLEDVVLQLKNGSAEEFAVVLMRLKKLIRDGQLDSGLINENFIVCVLFNRLSSCKAEDRLTVIQLLRSIALGNDESKEKMANIEFLSALVKSLIRGEEERRETVGLLLELSDLAAVRRQIGRIKGCILMLTSILNGIDPVASHDAAKLLDILSSNSQNALHMAAAGYFRPLVHYLEKGSDMNKILMATSLSRLVLTDHCKLSLGQEGAVESLVKMFNSGKLESKLSALNALQNLSSLTENVQRLVKTGIVGYLLQLLFSVTSVLMTLREPASAMLARIAQSESFLVNQDAAQQMLSLLSLNNSKVIQGHLLEALDSIASHPGASKVRRKMKEKGALQLILPLLKETKIRSKALSLLYTLSKDLTEEFSEHLDQTHLLNIVNIVISTTSDNEKANAVGILSNLPVNDKKVTDMLKRANLLPMLVHIMDSSTGSNSLTRSIIAESIAGIVIRFTCASDKKLQLLSAEQGVIPLLVKVLSGGSTITKFRAATSLAQLSQNSLPLRRSWKSRWLCASHSVNNAYCEVHDGYCFVNSTFCLIKAGAVSPLIQILVDKDEEAVEASLSALSTLLQDEIWEGGVKCIAELSGVDPIVKILETGNLKVQEKALWMLERIFRVDEYRVKYGESAEAVLIDLAQKNDSGLKPTVAKVLALLELLQAQSSYF* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0477 830 Gene3D - 169 367 IPR011989 -
Lja3g0477 830 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 830 - -
Lja3g0477 830 Gene3D - 368 677 IPR011989 -
Lja3g0477 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Lja3g0477 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 830 - -
Lja3g0477 830 SUPERFAMILY ARM repeat 339 784 IPR016024 -
Lja3g0477 830 Gene3D - 697 828 IPR011989 -
Lja3g0477 830 SUPERFAMILY ARM repeat 170 426 IPR016024 -
Lja3g0477 830 SMART arm_5 492 530 IPR000225 GO:0005515
Lja3g0477 830 SMART arm_5 698 738 IPR000225 GO:0005515
Lja3g0477 830 SMART arm_5 625 665 IPR000225 GO:0005515
Lja3g0477 830 SMART arm_5 742 782 IPR000225 GO:0005515
Lja3g0477 830 SMART arm_5 365 405 IPR000225 GO:0005515
Lja3g0477 830 SMART arm_5 406 449 IPR000225 GO:0005515
Lja3g0477 830 SMART arm_5 242 281 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0477 Lja-Chr3 4797052 4801313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0477 212 830 U-box Gene Family AT1G76390 28.786 1.01e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0477 K08332 - gmx:102659538 1137.48