Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0474 ATGGAGAGGAATAAGGTGCTAGTGATGTACACTATCTTATTCTGCTTCATGCAATATGATATCACTATGGCTCAGAAACAATCTATCCAAGATGATGAGACCTTGGTTTCACCAGAGGGAACCTTCGAAGCAGGATTCTTCCGCTTTGGAAATTCTCTACGCCGGTACTTTGGTATATGGTACAAGAGCATATCACCGAGGACAATTGTGTGGGTAGCCAATAGAGATGCCCCAGTACAAAACTCAACTGCAACTTTGAAGCTCACTGATCAAGGAAACCTCCTTATCCTTGATGGCTTAAAGGGCATAGTCTGGTCCTCCAATGCATCAAGAACTAAAGACAAACCTTTAATGCAGCTTTTAGACTCGGGAAACTTTGTGGTGAAAGATGGAGACAAGGAGGAGAACCTTATATGGGAAAGCTTTGATTATCCTGGTGACACTTTCCTTGCAGGAATGAAGATTAAGAGCAATTTAGCAACTGGGCCTACCAGTTATCTAACATCTTGGAGAAACGCAGAAGACCCGGCTAGTGGTGAGTTTTCTTATCACATAGATACTCATGGCTATCCTCAACTAGTTGTAACAAAGGGAGCAACTGTAACTTTGCGAGCAGGTCCGTGGATTGGCAATAAGTTTTCAGGAGCTTCTGGGCTAAGACTCCAGAAAATCTTGACATTCTCTATGCAGTTCACTGACAAGGAAGTTTCCTTAGAATATGAAACTGTGAACCGTTCAATTATTACTAGAACGGTGATCACCCCATCAGGCACTACACAACGTTTGTTGTGGTCAGATAGGAGTCAAAGTTGGGAGATCATATCTACTCACCCCATGGACCAGTGTGCATATTACGCCTTTTGCGGCGCTAATTCCATGTGTGATACTTCTAACAATCCCATATGTGATTGCTTGGAAGGTTTCACACCCAAATTTCAAGCTCAATGGAATTCATTAGATTGGACTGGAGGGTGTGTTCCAATAAAAAATTTAAGTTGTCAAAATGGAGATGGCTTTCCGAAGCACACAGGAGTGCAGTTTCCAGACACATCTTCTTCCTGGTATGGCAATAGCAAGAGCCTTGATGAGTGTGGGACGATATGTTTGCAAAACTGCTCTTGCACAGCATATGCATATTTAGATAATGTTGGTGGCAGGAGTGTCTGTCTGAATTGGTTTGGTGACATTCTGGATATGAGTGAACACCCTGACCCTGACCAAGGCCAGGAGATCTACTTACGGGTGGTTGCTTCAGAGTTAGATCATAGAAGGAATAAGAAGAGTATCAATATCAAGAAGCTTGCAGGGAGTCTGGCAGGAAGCATTGCATTCATTATATGCATAACAATCCTTGGATTGGCCACAGTCACGTGTATTCGGAGGAAGAAGAATGAGAGAGAGGACGAGGGTGGAATAGAAACAAGAATAATAAATCACTGGAAGGACAAGAGAGGTGATGAGGACATTGATTTGGCAACAATATTTGATTTTTCTACCATCTCTAGTACAACAAATCACTTTTCAGAAAGTAACAAATTAGGAGAAGGTGGCTTTGGACCAGTCTACAAGGGCGTATTAGCTAATGGGCAGGAGATTGCTGTCAAGAGACTTTCTAATACTTCAGGACAGGGAATGGAGGAGTTCAAAAATGAAGTCAAGTTGATAGCAAGACTTCAGCACCGCAATCTTGTGAAACTTCTTGGTTGTTCTATTCATCATGATGAAATGTTGATCTATGAATTCATGCACAACAGAAGCTTGGATTACTTTATTTTTGACTCAACACAAAGTAAACTAGTAGACTGGAACAAGCGCTTCCAAATTATTGATGGGATTGCTCGAGGGCTTCTTTATCTTCACCAAGACTCAAGATTAAGAATTATCCATAGAGATCTGAAAACTAGTAACATTCTTCTTGATAGTGAAATGAACCCAAAGATATCAGATTTTGGTTTGGCTAGAATTTTTACAGGAGATCAAGTTGAGGCTAAGACAAAGAGAGTGATGGGAACATATGGCTATATGTCTCCAGAGTATGCGGTGCATGGATCCTTTTCAGTAAAATCTGATGTTTTTAGCTTTGGCGTAATCGTGCTTGAGATAATTAGTGGGAAGAAAATTGGGAGATTTTGTGATCCTCACCGTCACCGTAATCTTCTAAGTCATGCATGGAGACTATGGATTGAAGAAAGACCACTAGAGCTAGTAGACGAGTTATTAGATGGTCTAGCCATCCCAACCGAAATATTACGATATATTCATATAGCTCTATTGTGTGTGCAACAGAGACCAGAATATAGGCCTGATATGTTATCTGTAGTTTTAATGTTGAATGGCGAGAAAGAACTCCCTAAGCCAAGCCTGCCAGCATTCTACACAGGAAATGATGATCTACTATGGCCGGAATCTACTTCAAAAAATTGTGAAAGGTGTTCAACAACTTCTGAAGTTACCATCTCATTATTAGAAGCCAGATAG 2478 0.4104 MERNKVLVMYTILFCFMQYDITMAQKQSIQDDETLVSPEGTFEAGFFRFGNSLRRYFGIWYKSISPRTIVWVANRDAPVQNSTATLKLTDQGNLLILDGLKGIVWSSNASRTKDKPLMQLLDSGNFVVKDGDKEENLIWESFDYPGDTFLAGMKIKSNLATGPTSYLTSWRNAEDPASGEFSYHIDTHGYPQLVVTKGATVTLRAGPWIGNKFSGASGLRLQKILTFSMQFTDKEVSLEYETVNRSIITRTVITPSGTTQRLLWSDRSQSWEIISTHPMDQCAYYAFCGANSMCDTSNNPICDCLEGFTPKFQAQWNSLDWTGGCVPIKNLSCQNGDGFPKHTGVQFPDTSSSWYGNSKSLDECGTICLQNCSCTAYAYLDNVGGRSVCLNWFGDILDMSEHPDPDQGQEIYLRVVASELDHRRNKKSINIKKLAGSLAGSIAFIICITILGLATVTCIRRKKNEREDEGGIETRIINHWKDKRGDEDIDLATIFDFSTISSTTNHFSESNKLGEGGFGPVYKGVLANGQEIAVKRLSNTSGQGMEEFKNEVKLIARLQHRNLVKLLGCSIHHDEMLIYEFMHNRSLDYFIFDSTQSKLVDWNKRFQIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDSEMNPKISDFGLARIFTGDQVEAKTKRVMGTYGYMSPEYAVHGSFSVKSDVFSFGVIVLEIISGKKIGRFCDPHRHRNLLSHAWRLWIEERPLELVDELLDGLAIPTEILRYIHIALLCVQQRPEYRPDMLSVVLMLNGEKELPKPSLPAFYTGNDDLLWPESTSKNCERCSTTSEVTISLLEAR* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0474 825 Gene3D Phosphorylase Kinase; domain 1 481 581 - -
Lja3g0474 825 ProSiteProfiles Protein kinase domain profile. 507 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0474 825 ProSiteProfiles PAN/Apple domain profile. 333 416 IPR003609 -
Lja3g0474 825 Gene3D Transferase(Phosphotransferase) domain 1 582 786 - -
Lja3g0474 825 CDD STKc_IRAK 513 779 - -
Lja3g0474 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Lja3g0474 825 Gene3D - 16 142 IPR036426 -
Lja3g0474 825 Pfam PAN-like domain 333 399 IPR003609 -
Lja3g0474 825 SUPERFAMILY Protein kinase-like (PK-like) 491 777 IPR011009 -
Lja3g0474 825 SMART serkin_6 507 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0474 825 Pfam D-mannose binding lectin 68 171 IPR001480 -
Lja3g0474 825 Pfam S-locus glycoprotein domain 204 312 IPR000858 GO:0048544
Lja3g0474 825 Pfam Protein tyrosine and serine/threonine kinase 510 772 IPR001245 GO:0004672|GO:0006468
Lja3g0474 825 ProSiteProfiles Bulb-type lectin domain profile. 20 141 IPR001480 -
Lja3g0474 825 CDD B_lectin 27 145 IPR001480 -
Lja3g0474 825 SMART ntp_6 334 415 IPR003609 -
Lja3g0474 825 CDD PAN_AP_plant 330 415 - -
Lja3g0474 825 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 812 - -
Lja3g0474 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 176 IPR036426 -
Lja3g0474 825 PIRSF SRK 3 825 IPR024171 GO:0004674
Lja3g0474 825 SMART blect_4 26 145 IPR001480 -
Lja3g0474 825 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0474 Lja-Chr3 4778421 4782653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0474 438 792 Receptor kinase-like Gene Family AT4G23190 51.374 6.08e-120 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g0474 PK_Tyr_Ser-Thr 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0474 - - lja:Lj3g3v3375760.2 1355.12