Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0472 ATGGATAAGAACAAGGTTCTAGTGATATACTCTTTCTTATTCTGCTTCATGCCCTTGTTATCTAGCCAGAATTATATCACTGTGACTCAGAATCAATCTATCCAAGATGATGAGACCCTGGTTTCAGCAGAGGGAACTTTCGAAGCAGGATTCTTCAGCCTTGGAAATTCACAACGCCAATACTTTGGTATATGGTACAAGAGCATATCACCAAGGACAATTGTGTGGGTAGCTAACAGAGATGCCCCAGTTCAAAATTCAACAGCAACAATAAAGCTCACTGATAAAGGAAACCTCCTCATCCTTGATGGCTCAAAGGGTATAATCTGGTCCTCCAATGGATCAAGAGCTGCAGAGAAACCTTACATGCAACTTTTAGACTCGGGAAACCTTGTTGTGAAAGATGGAGGCAAGAGGAAGAAGAACCTTATATGGGAAAGCTTTGATTATCCAGGTGACACTTTGCTTGCAGGAATGAAGATTAAGAGCAATTTAGTGAAGGGGCCTACCAGTTATCTAACATCTTGGAGAAATACAGAAGACCCTGCTAGTGGTGAGTTTTCATATCTCATAGATACTCGTGGCTTTCCTCAACTAGTTATTACAAGGAATGCAACTGCATATTACAGAGCAGGCCCATGGACTGGCAAATTGTTTTCAGGATCTTCTTGGCTAAGACTGCGGAAAATCTTGACATTCTCTATGCAGTTCACTAGCCAGGAAATTTCTTTAGAATATGAAACCGCGAACCGTTCGATTATTACGAGAGCAGTGATCAACCCATCTGGTACCACACAACGTTTGTTGTGGTCAGATAGGAGTCAAAGTTGGGAGATTATATCTACTCACCCCACGGACCAATGTACATATTATGGCCTTTGTGGTGCTAATTCCATGTGTGATATTTCTAACAATCCCATATGTCATTGCTTGGAAGGTTTCAGGCCCAAATTTCAAGCAAAATGGAATTCATTTGACTGGCCTGGAGGGTGTGTTCCAATGAAAAATTTAAGTTGTCAGAATGGAGATGGCTTTCTGAAGCACACAGGAGTGAAGTTGCCAGACACATCTTCTTCCTGGTATGGCAAGAACAAGAGCCTTGATGAGTGTGGGACGTTATGTTTGCAAAACTGCTCTTGCACATCATATGCATATTTAGATAATGATATTGGTGGTAGTGCCTGCTTGATTTGGTTTGGTGACATTCTGGATTTGAGTATACACCCTAACCCTGACCAAGGACAAGAGATATACATAAAGGTGGTTGCTTCGGAGTTAGATCATAGAAGAAATAAGAAGAGCTTCATGACTAAGAAGCTTGCAGGGAGTCTGGCAGGAATTGTTGCATTAGTTATATGCATAATAATCCTTGGATTGGCTACATCCACATGTATACAGAGGAAGAAGAATGAGAGAGGGGATGGAGGAACTATGAATCACTGGAAGGACAAGAGAGAGGATGAAGACATTGATCTGGGTACAATATTTGATTTTTCAATCATCTCTAGTGTCACAGATCACTTTTCAGAAAGTAACAAATTAGGGGAGGGTGGCTTTGGACCAGTCTACAAGGGCATATTAGCAAATGGGCAGGAGATTGCTGTCAAGAGGCTTTCTAATGCTTCGGGACAAGGAATGGAGGAGTTCAAAAATGAAGTCAAGTTGATTGCAAGACTTCAGCACCGCAATCTCGTAAAACTTTTTGGTTGTTCTATTCATCAAGATGAGAAGTTGTTGATCTATGAATTCATGCACAATAGAAGCTTGGATTACTTTATTTTTGATTCAACACGAAGTAAACTACTAGATTGGAATAAGCGCCTGCAAATCATTGATGGGATTGCTCGAGGGCTTCTCTATCTTCACCAAGACTCAAGACTAAGAATCATCCATAGAGATCTGAAAACTAGTAACATTCTTCTTGATAATGAAATGAACCCAAAGATATCAGATTTTGGTTTGGCTAGAATTTTTATAGGAGATCAAGTTGAGGCTAGAACAAAGAGAGTGATGGGAACATATGGCTATATGCCTCCTGAGTATGCGGTACATGGATCTTTTTCTATCAAATCTGATGTTTTTAGCTTTGGTGTAATCGTACTTGAGATAATTAGTGGGAAGAAGATTAGGAAATTTTATGATCCTCACCATCATCTTAATCTTCTCAGTCATGCATGGAGACTATGGATTGAAGGAAGTCCATTAGAGCTAGTAGACAAGTTATTCGAAGATTCAATCATCCCAACCGAAATATTGCGATATATTCATGTAGCTCTATTGTGTGTACAACGGAGACCAGAAACTAGGCCTGACATGTTATCTATAGTTTTAATGTTGAATGGTGAGAAAGAACTCCCTAAGCCAAGCCTGCCTGCATTCTACACGGGAAAGCATGATCCAATTTTGTTGGAATCTCCTTCAAGAAGGTGTTCAACTTCTGTTACCATCTCATTAGAAGCTAGATAG 2466 0.4019 MDKNKVLVIYSFLFCFMPLLSSQNYITVTQNQSIQDDETLVSAEGTFEAGFFSLGNSQRQYFGIWYKSISPRTIVWVANRDAPVQNSTATIKLTDKGNLLILDGSKGIIWSSNGSRAAEKPYMQLLDSGNLVVKDGGKRKKNLIWESFDYPGDTLLAGMKIKSNLVKGPTSYLTSWRNTEDPASGEFSYLIDTRGFPQLVITRNATAYYRAGPWTGKLFSGSSWLRLRKILTFSMQFTSQEISLEYETANRSIITRAVINPSGTTQRLLWSDRSQSWEIISTHPTDQCTYYGLCGANSMCDISNNPICHCLEGFRPKFQAKWNSFDWPGGCVPMKNLSCQNGDGFLKHTGVKLPDTSSSWYGKNKSLDECGTLCLQNCSCTSYAYLDNDIGGSACLIWFGDILDLSIHPNPDQGQEIYIKVVASELDHRRNKKSFMTKKLAGSLAGIVALVICIIILGLATSTCIQRKKNERGDGGTMNHWKDKREDEDIDLGTIFDFSIISSVTDHFSESNKLGEGGFGPVYKGILANGQEIAVKRLSNASGQGMEEFKNEVKLIARLQHRNLVKLFGCSIHQDEKLLIYEFMHNRSLDYFIFDSTRSKLLDWNKRLQIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDNEMNPKISDFGLARIFIGDQVEARTKRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVIVLEIISGKKIRKFYDPHHHLNLLSHAWRLWIEGSPLELVDKLFEDSIIPTEILRYIHVALLCVQRRPETRPDMLSIVLMLNGEKELPKPSLPAFYTGKHDPILLESPSRRCSTSVTISLEAR* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0472 821 Gene3D Hepatocyte Growth Factor 335 414 - -
Lja3g0472 821 SUPERFAMILY Hairpin loop containing domain-like 343 418 - -
Lja3g0472 821 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Lja3g0472 821 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 798 - -
Lja3g0472 821 CDD STKc_IRAK 514 781 - -
Lja3g0472 821 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Lja3g0472 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 216 IPR036426 -
Lja3g0472 821 PIRSF SRK 2 820 IPR024171 GO:0004674
Lja3g0472 821 SUPERFAMILY Protein kinase-like (PK-like) 492 808 IPR011009 -
Lja3g0472 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Lja3g0472 821 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 798 - -
Lja3g0472 821 Gene3D - 22 148 IPR036426 -
Lja3g0472 821 Gene3D Phosphorylase Kinase; domain 1 482 583 - -
Lja3g0472 821 Pfam PAN-like domain 339 405 IPR003609 -
Lja3g0472 821 ProSiteProfiles Protein kinase domain profile. 508 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0472 821 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Lja3g0472 821 SMART ntp_6 340 421 IPR003609 -
Lja3g0472 821 CDD B_lectin 31 151 IPR001480 -
Lja3g0472 821 Pfam D-mannose binding lectin 73 177 IPR001480 -
Lja3g0472 821 SMART blect_4 31 151 IPR001480 -
Lja3g0472 821 Gene3D Transferase(Phosphotransferase) domain 1 584 787 - -
Lja3g0472 821 Pfam Protein tyrosine and serine/threonine kinase 511 724 IPR001245 GO:0004672|GO:0006468
Lja3g0472 821 CDD PAN_AP_plant 336 421 - -
Lja3g0472 821 SMART serkin_6 508 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0472 Lja-Chr3 4766596 4770668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0472 447 793 Receptor kinase-like Gene Family AT4G23230 52.991 3.50e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g0472 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0472 - - lja:Lj3g3v3375760.2 1338.94