Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0471 ATGTGGTGTGTGAATTCTGATACCAAGATAAATACGCCAAATGCAAAATACGAAAACAAGAAGCAAGAAGCAACTGAGGAAGAAGCATTAAACAAAATTGAAATGAGAATCAGAGTGTCTTACTTGTTAGTGCTATGTTTTACCTTAATTTGGTTCAGATGGACAGTGGTGTACTCTTCATTCAGTGATCTCGATGCACTGCTAAAGCTCAAAGAATCCATGAAGGGAGCCAAAGCCAAACACCACGCACTCGAAGATTGGAAGTTTTCCACCTCACTCTCAGCACACTGTTCGTTTTCCGGCGTAACGTGCGACCAGAACTTGCGAGTGGTTGCTCTCAACGTCACGCTGGTTCCGCTTTTCGGCCACCTTCCGCCGGAGATAGGGTTGTTGGAGAAGTTAGAGAATCTCACCATCTCCATGAACAACCTCACTGACCAGCTTCCCTCCGACCTTGCAAGCCTCACCTCCCTCAAGGTCCTCAACATCTCCCACAACCTCTTCTCCGGCCAATTCCCTGGTAACATCACCGTTGGCATGACGGAGCTCGAGGCCCTTGATGCCTACGACAACAGCTTCTCCGGTCCTCTCCCGGAGGAAATCGTCAAGCTCGAGAAACTCAAGTACCTCCACCTCGCCGGGAACTATTTCTCCGGTACAATACCGGAGAGCTACTCGGAGTTTCAGAGCCTTGAGTTTCTCGGCTTGAACGCAAACAGCTTAACCGGGAGAGTCCCGGAGAGCTTGGCGAAGTTGAAGACGTTGAAGGAACTGCACCTCGGTTACTCGAACGCTTACGAAGGTGGAATCCCGCCGGCGTTCGGTTCCATGGAGAATCTCCGCCTGCTAGAAATGGCTAACTGCAACCTCACCGGCGAGATTCCACCGAGCCTGGGGAATCTAACCAAACTCCACTCCTTATTCGTGCAGATGAACAACCTCACCGGAACCATTCCGCCGGAGCTATCTTCCATGATGAGCCTCATGTCACTGGACCTCTCCATCAACGACCTCACCGGCGAGATCCCGGAGAGCTTCTCAAAACTGAAGAATCTCACTCTAATGAACTTCTTCCAAAACAAGTTCCGCGGCTCTCTCCCCTCCTTCATCGGCGACCTTCCAAATCTCGAAACGCTTCAGGTTTGGGAGAACAATTTCTCCTTCGTGCTGCCGCACAATCTCGGCGGAAACGGAAGATTCTTATACTTCGACGTCACCAAAAACCACCTCACCGGGTTGATTCCGCCGGATCTATGCAAAAGCGGGAGGTTGAAAACGTTCATCATCACTGATAACTTCTTCCGTGGCCCAATTCCCAAGGGAATCGGCGAGTGTAGGTCACTCACGAAGATTCGCGTGGCTAACAACTTCCTTGACGGTCCAGTTCCACCAGGGGTTTTCCAACTGCCTTCCGTTACGATAACGGAATTGAGCAATAACCGCCTCAACGGCGAACTGCCTTCCGTGATTTCAGGCGAATCTCTCGGGACGCTCACGCTTTCCAACAACCTCTTCACCGGAAAAATCCCCGCCGCGATGAAAAACCTCAGAGCGTTGCAGAGCTTATCCCTCGACGCCAATGAGTTCATCGGAGAAATTCCGGGGGGAGTTTTTGAAATCCCAATGCTCACCAAAGTCAACATCAGCGGCAACAACCTCACAGGTCCGATCCCAACGACGATCACTCACCGTGCTTCTCTGACGGCGGTAGACCTCAGCCGGAACAACCTCGCCGGCGAGGTTCCGAAGGGGATGAAGAATTTGATGGACTTAAGCATTCTGAATCTCTCACGCAACGAGATTTCTGGACCGGTTCCTGATGAGATTCGATTCATGACTAGCCTCACGACGCTGGATCTCTCGAGTAACAATTTCACCGGAACAGTCCCCACCGGCGGCCAGTTTCTGGTATTCAACTACGACAAGACGTTCGCCGGAAACCCGAACCTCTGTTTCCCTCACAGAGCATCCTGTCCTTCTGTCCTCTACGACTCGTTAAGGAAAACCCGCGCCAAAACGGCGCGGGTGAGGGCGATTGTGATTGGAATTGCACTCGCCACGGCGGTGTTGCTGGTGGCGGTGACGGTGCACGTGGTCAGAAAGCGGAGGCTGCACCGAGCGCAGGCCTGGAAGCTCACCGCGTTCCAGAGGCTGGAGATCAAGGCGGAGGATGTAGTCGAGTGTTTAAAGGAAGAGAATATAATTGGGAAAGGAGGAGCAGGCATCGTGTACAGAGGTTCCATGCCGAACGGAACCGACGTGGCGATCAAGCGGTTGGTAGGGCAGGGAAGTGGGAGGAACGATTACGGTTTCAGGGCGGAGATTGAGACGTTGGGGAAAATCCGGCACCGGAATATAATGAGGCTTCTGGGGTACGTTTCGAACAAGGATACGAACTTGTTGCTGTATGAGTACATGCCGAATGGGAGCTTAGGGGAGTGGCTGCACGGTGCGAAGGGTGGGCACTTGCGGTGGGAGATGAGGTATAAGATTGCGGTGGAGGCGGCGAGGGGACTCTGCTATATGCACCATGATTGCTCTCCTCTTATTATTCACAGGGATGTTAAGTCCAACAACATTTTGCTTGATGCTGATTTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTTTTGTATGACCCTGGTGCTTCTCAGTCCATGTCCTCCATTGCTGGCTCCTACGGTTACATTGCTCCAGAGTATGCTTACACGCTGAAAGTGGACGAGAAGAGTGACGTGTACAGCTTTGGCGTTGTGCTGTTGGAACTGATCATAGGGAGAAAGCCAGTGGGTGAGTTTGGAGATGGCGTGGACATCGTTGGATGGGTCAACAAAACCATGTCAGAGCTCTCTCAGCCGTCGGATACTGCATTAGTGTTAGCAGTGGTGGACCCTCGCCTCAGTGGATACCCCTTGACAAGTGTCATCCACATGTTCAACATAGCTATGATGTGTGTGAAGGAAATGGGCCCTGCTAGGCCCACCATGAGGGAAGTTGTTCATATGCTCACTAATCCTCCTCAGTCTAATACCTCCACTCAAGACCTAATTAATCTCTAG 3063 0.5162 MWCVNSDTKINTPNAKYENKKQEATEEEALNKIEMRIRVSYLLVLCFTLIWFRWTVVYSSFSDLDALLKLKESMKGAKAKHHALEDWKFSTSLSAHCSFSGVTCDQNLRVVALNVTLVPLFGHLPPEIGLLEKLENLTISMNNLTDQLPSDLASLTSLKVLNISHNLFSGQFPGNITVGMTELEALDAYDNSFSGPLPEEIVKLEKLKYLHLAGNYFSGTIPESYSEFQSLEFLGLNANSLTGRVPESLAKLKTLKELHLGYSNAYEGGIPPAFGSMENLRLLEMANCNLTGEIPPSLGNLTKLHSLFVQMNNLTGTIPPELSSMMSLMSLDLSINDLTGEIPESFSKLKNLTLMNFFQNKFRGSLPSFIGDLPNLETLQVWENNFSFVLPHNLGGNGRFLYFDVTKNHLTGLIPPDLCKSGRLKTFIITDNFFRGPIPKGIGECRSLTKIRVANNFLDGPVPPGVFQLPSVTITELSNNRLNGELPSVISGESLGTLTLSNNLFTGKIPAAMKNLRALQSLSLDANEFIGEIPGGVFEIPMLTKVNISGNNLTGPIPTTITHRASLTAVDLSRNNLAGEVPKGMKNLMDLSILNLSRNEISGPVPDEIRFMTSLTTLDLSSNNFTGTVPTGGQFLVFNYDKTFAGNPNLCFPHRASCPSVLYDSLRKTRAKTARVRAIVIGIALATAVLLVAVTVHVVRKRRLHRAQAWKLTAFQRLEIKAEDVVECLKEENIIGKGGAGIVYRGSMPNGTDVAIKRLVGQGSGRNDYGFRAEIETLGKIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGAKGGHLRWEMRYKIAVEAARGLCYMHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLYDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTMSELSQPSDTALVLAVVDPRLSGYPLTSVIHMFNIAMMCVKEMGPARPTMREVVHMLTNPPQSNTSTQDLINL* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0471 1020 Gene3D Ribonuclease Inhibitor 265 369 IPR032675 -
Lja3g0471 1020 Gene3D Ribonuclease Inhibitor 180 264 IPR032675 -
Lja3g0471 1020 Pfam Leucine Rich Repeat 279 301 IPR001611 GO:0005515
Lja3g0471 1020 SUPERFAMILY Protein kinase-like (PK-like) 723 1004 IPR011009 -
Lja3g0471 1020 SMART LRR_typ_2 516 540 IPR003591 -
Lja3g0471 1020 SMART LRR_typ_2 155 179 IPR003591 -
Lja3g0471 1020 SMART LRR_typ_2 301 325 IPR003591 -
Lja3g0471 1020 SMART LRR_typ_2 612 635 IPR003591 -
Lja3g0471 1020 SMART LRR_typ_2 373 397 IPR003591 -
Lja3g0471 1020 ProSiteProfiles Protein kinase domain profile. 729 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0471 1020 Pfam Protein tyrosine and serine/threonine kinase 730 1004 IPR001245 GO:0004672|GO:0006468
Lja3g0471 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
Lja3g0471 1020 SUPERFAMILY RNI-like 113 456 - -
Lja3g0471 1020 Gene3D Phosphorylase Kinase; domain 1 693 805 - -
Lja3g0471 1020 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 44 1011 - -
Lja3g0471 1020 PANTHER UNNAMED PRODUCT 44 1011 - -
Lja3g0471 1020 Gene3D Ribonuclease Inhibitor 62 179 IPR032675 -
Lja3g0471 1020 Gene3D Ribonuclease Inhibitor 389 661 IPR032675 -
Lja3g0471 1020 SUPERFAMILY L domain-like 342 667 - -
Lja3g0471 1020 Gene3D Transferase(Phosphotransferase) domain 1 806 1018 - -
Lja3g0471 1020 Pfam Leucine rich repeat N-terminal domain 62 105 IPR013210 -
Lja3g0471 1020 SMART serkin_6 729 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0471 1020 Pfam Leucine rich repeat 566 625 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0471 Lja-Chr3 4753333 4758427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0471 60 1010 Receptor kinase-like Gene Family AT1G75820 61.805 0.0 1222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja3g0471 PK_Tyr_Ser-Thr 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0471 K00924 - gmx:732625 1506.12