Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0463 ATGATGCTAGGCCAAGAAGTAAAGGGATCAAGATGTCAAGAGTGTGGGAACCAAGCCAAGAAGGGTTGTGCATACTCAAGGTGCAGAACTTGCTGCAACAACAAAGGTTTTCAGTGCCAAACCCATGTTAGAAGCACTTGGATTCCTGTCGATAGAAGGCGCCACCGATTAATGGAGCATCAACCACCTCCCACAACTAATAATCCACACCACCTTCATGAAGATATCCCTCAAAGCCACAACCAGAACCCATTTACAAGTTTAGAGGAGTTGAAATTTCCAGAAGCTATGAGTTCCATGGCGGTATTCAGCAGTGTTCGCGTGCGATCCATGGATGACTCGGTTAATGAAATGGCCTATCAAACATCTGTGAACATTGGAGGACATAGATTTAGTGGGATTCTTTATGATCAAGGCCCTGAACAACAAAGCCTTAATGCTAGCCCTCTTGATCAGCATCAAAATCTCAATCTTACCACAATCCACAGCCATGATGGTGCAACTATGGCTCCACCATCATCATCAGCCACTGCTGCTCATGAACTTTTTTTTCCTCAGCCGCGCTCATTAGCTTCCTTCAGGTCTGGTGTGCCATATTTTTCACACACAAAACCATAA 618 0.4482 MMLGQEVKGSRCQECGNQAKKGCAYSRCRTCCNNKGFQCQTHVRSTWIPVDRRRHRLMEHQPPPTTNNPHHLHEDIPQSHNQNPFTSLEELKFPEAMSSMAVFSSVRVRSMDDSVNEMAYQTSVNIGGHRFSGILYDQGPEQQSLNASPLDQHQNLNLTTIHSHDGATMAPPSSSATAAHELFFPQPRSLASFRSGVPYFSHTKP* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0463 205 PANTHER BNAC01G23660D PROTEIN 6 194 - -
Lja3g0463 205 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 194 IPR007818 GO:0003700|GO:0006355
Lja3g0463 205 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 12 53 IPR006510 -
Lja3g0463 205 Pfam Domain of unknown function (DUF702) 9 141 - -
Lja3g0463 205 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 92 140 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0463 Lja-Chr3 4698463 4699524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0463 12 148 C2H2 Transcription Factor Family AT2G18120 47.887 2.85e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja3g0463 DUF702 7.8e-44 No_clan