Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0446 ATGGAAGTTGCGGTGGCGAAAGCGTTGAAACCGAGTCTTCAGACAGAGTTTGTTTTCTCCCAGGAAATTCGCAACGAGATTTTGTGCCTGAACGCAAACAACGTTGTTGTCGGTGAGGATTTTTCTGTCGATGATTTGCTTGACTTTTCCAATGGAAAAGAAATGGATGATTATGAAGAGGAGGAAGAGGAAGAGGAAGAAGAGAAAGGTAGCACCGTCTCAGGAGGATCACAGGACCGAATAGAAGAAGATAGCAATTCCAATTCCACCGCCGCCGGTGACTATGACTCCATTTTTGCCGGCGAATTGGCGGTTCCGGCTGATGATGTGGCGGGCCTGGAGTGGGTTTCTCACTTTGTCGACGATTCTCTCCCAGAGCTTTCTCTTCTGTATCCTGTCCGGGCCGAGCAAACACGGGCCCGGGCCGAACCGGAAGCTAGACCAGGCTCAGACCGAGCCCCTTTCCCTTTCCGCACCAAGCCGAGAACTACCAGGACTCGAAAGCCCATTGGTCACGTGTGGTCGTTTAACCCCATGGGGTTTTCCTCGATGGCGCCACCTCTCTCCGGCGAGGGGTTCCGTCAGCCGCCGATGAAGAAGCAGAAGAAAAAGCCCGAAGCCCAGGACCATACAGGTGGGCCTCAGTTTCAGCGAAGGTGCAGCCACTGCCAAGTGCAGAAAACACCCCAGTGGAGGGCCGGCCCGCTGGGCCCGAAAACACTATGCAATGCTTGCGGCGTCCGGTTCAAGTCCGGTCGGCTTTTTCCGGAGTATAGACCGGCCTGTAGCCCAACTTTCTCTGGTGAAATTCACTCTAACAGCCATCGCAAAGTGCTGGAGATGAGGAGAAGGAAGGAGACGGCTGAACCGGTTTCCGGTTTGGATCAGGCTCGAATGGTTCAGAGTTTTTGA 912 0.5395 MEVAVAKALKPSLQTEFVFSQEIRNEILCLNANNVVVGEDFSVDDLLDFSNGKEMDDYEEEEEEEEEEKGSTVSGGSQDRIEEDSNSNSTAAGDYDSIFAGELAVPADDVAGLEWVSHFVDDSLPELSLLYPVRAEQTRARAEPEARPGSDRAPFPFRTKPRTTRTRKPIGHVWSFNPMGFSSMAPPLSGEGFRQPPMKKQKKKPEAQDHTGGPQFQRRCSHCQVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKETAEPVSGLDQARMVQSF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0446 303 MobiDBLite consensus disorder prediction 54 69 - -
Lja3g0446 303 Gene3D - 214 288 IPR013088 GO:0006355|GO:0008270
Lja3g0446 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 277 - -
Lja3g0446 303 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Lja3g0446 303 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Lja3g0446 303 PANTHER GATA TRANSCRIPTION FACTOR 1 301 - -
Lja3g0446 303 MobiDBLite consensus disorder prediction 185 220 - -
Lja3g0446 303 MobiDBLite consensus disorder prediction 140 164 - -
Lja3g0446 303 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Lja3g0446 303 MobiDBLite consensus disorder prediction 284 303 - -
Lja3g0446 303 SMART GATA_3 214 268 IPR000679 GO:0006355|GO:0043565
Lja3g0446 303 PANTHER GATA TRANSCRIPTION FACTOR 1 301 - -
Lja3g0446 303 MobiDBLite consensus disorder prediction 51 93 - -
Lja3g0446 303 PIRSF Txn_fac_GATA_plant 13 302 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lja3g0446 303 CDD ZnF_GATA 219 276 IPR000679 GO:0006355|GO:0043565
Lja3g0446 303 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0446 Lja-Chr3 4545695 4547201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0446 40 290 C2C2-Gata Transcription Factor Family AT4G36240 44.015 3.18e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja3g0446 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0446 - - gmx:100776188 375.17