Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0442 ATGGAGGAAAAGTATGAGATATTGGAGGACATTGGTTCAGGGAACTTCGGAGTGGCCAAGTTGGCCAAACACAAGGACACAGGGGAACGTGTTGCTGTGAAGTACATTGAGAGAGGAAACAAGATTGATGAGTGCGTGCAAAGGGAGATACTCAACCACCGGTCGTTAAAGCATCCACATATTATAGGGTTCAAAGAGGTATTTCTGACCCCTACTCATTTAGCTATTGTCCTAGAGTATGCTGCTGGTGGTGAACTCTTCGACAGGATATGCACCGCTGGTCGGTTGAGTGAAGATGAGGCAAGATATTTCTTCCAGCAACTACTATCTGGAGTTAGCTACTGTCATTCCATGCAAATTTGCCATAGAGATTTGAAATTGGAAAACACTCTATTGGATGGGAGTCCAGCTCCTAGAGTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTATTGCACTCTCAACCTAAATCAGCAGTAGGAACTCCAGCATACGTTGCTCCAGAGGTTTTGTCACGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTTTATGTCATGTTAGTTGGATCATACCCATTTGATGATCCAGAAGATCCTACAGATTTCAGCAAGAGTATTGCGAGAATAAAGAGTGTTCAGTACTCCATACCTGACCATATACACATTTCTACAGAGTGTAGGAATCTAATCTCTCGTATTTTTGTTGCAAATCCTGCCAATCGAATCAGCATCTCAGAGATAAAACAGCTCCCATGGTTTCGGAAGAAATTGCCTAGAGAGATAATTGAGGCTGATAGAAAAAGTGGTGAGAAAGCAGAAAAGGAGCAACCAAGCCAATATGTGGAAGAAATCATGCGGATCGTACAAGAGGCAAGGACACCAGGACCTGGAAGCGAAGATAGTGAGGAGGAAGCTTGGACAGGCTCATCTGATGCTGTGGATGTGCCTATTTGA 978 0.4335 MEEKYEILEDIGSGNFGVAKLAKHKDTGERVAVKYIERGNKIDECVQREILNHRSLKHPHIIGFKEVFLTPTHLAIVLEYAAGGELFDRICTAGRLSEDEARYFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRVKICDFGFSKSALLHSQPKSAVGTPAYVAPEVLSRKEYDGKIADVWSCGVTLYVMLVGSYPFDDPEDPTDFSKSIARIKSVQYSIPDHIHISTECRNLISRIFVANPANRISISEIKQLPWFRKKLPREIIEADRKSGEKAEKEQPSQYVEEIMRIVQEARTPGPGSEDSEEEAWTGSSDAVDVPI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0442 325 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 322 - -
Lja3g0442 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lja3g0442 325 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
Lja3g0442 325 MobiDBLite consensus disorder prediction 297 325 - -
Lja3g0442 325 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0442 325 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Lja3g0442 325 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0442 325 PANTHER SERINE/THREONINE KINASE 3 322 - -
Lja3g0442 325 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Lja3g0442 325 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Lja3g0442 325 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0442 Lja-Chr3 4527493 4530449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0442 4 271 CBL-interacting serine-threonine protein kinases AT4G24400 44.404 2.89e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lja3g0442 Pkinase 5.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0442 K14498 - gmx:547790 516.538