Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0435 ATGGATTCCATTTTCGACATGAAATCCTTAAGCCATGGCTTAGTTTGTGGCCTGCGAGAGCGAGACAAAAATCTTCCAAACACAGAGGAGGAAGAAGAGGATAAGCGTGAAAACTTTACAATTCTGAGTGAACTCGAGATCAAGCGACTTCAAGAGGATGCCATTAACAAGGTTGCATCGGTGCTCTGTATACCCGATGCTTCTGCTTGTTTTTTGCTCTGTCACAATCTGTGGAATGTGACCAAAGTTCTTGAATCTTGGTGTGAAGATGAAGAAAAAGTTCAGAAGGCTGCAGGGTTGTTGAACCAACCCAAGGTGGAGATTGACTGGCTGAAAGATTTGTGTCAGGTCTGTTTTCGATCGTCCGAGAAGGGTAAGATTTTGTCTGCTGGGTGTGCTCATCCATTGTGTGAAGCTTGCTGGATGGATTATATAGACACAAACATTAACAAGGGTCCTTCTAAGTGTTTGACACTTAGGTGCCCTGATCCTTCTTGTGATGTAGCTGTGGATCGAGACATGATTCGTGAACTTGCTAGCGAGTCGAGTAAAGTGATGTATGAGCAGTTTTTGTTATGGTCTTATGTGGATAGCAAGGCGAAGATGAGGTGGTGCCCTGCGCCGGGTTGTGATTATGTTGTGTGTTATCAAGGTGATGGTGGTTGTGCTAGAGATTTGGATGTTACCTGCCTTTGTTATCACAGCTTTTGTTGGAGGTGTGGGGAAGAATCTCATAGTCCTGTGGATTGCGAAACTGCTGGTCGATGGATGAAGAAGATTGATAAGTCTACATCTGAGAATGGAAAGTGGATTCTTGCTCATACTAAACCATGTCCTCGATGCAAGAGTCTTATTGAGAAAAACCAAGGGTTCAAGTACATGACATGTAAATGTGGTTTTCAATTTTGCTGGGTATGCTTTCATGAACAGTTGAAATGTGAAAGCAGAAGTTGCAGTCCTTTTATTCGCATGCATATTATGGAGTTTCAAGGTACGGATGGGGAAGAAGTGGAGATAAATATGGAAAAAGATAATCCAAAGAAGTGCAATCACTACTATGAGTGTTGGGCTAGAAATGATTTTTTAAGTAAAAGTATTCTACAGAAATTGATTGACCTGGATAGAAAGTACCTGAGCATGTCACTGCAAAAGCGCGAAACTTATTTTGACTTCGTAAAAAAGGCCTGGCAACAAATAGCTGAATGTAGAAGAATACTCAAATGGACTAATGTATATGGATACTTTCTCCCCAAGAATGAAAAGGCTAAGAAGCAGTTTTCTGAGTACATTCAAGTTGAAGCTGAGGTAGCTTTGGAAAAACTTCAGCAATGTGCAAAAGTGGAAGAAACAATGTTTCAAGACAATTATCCAGAAGAATCTCTTAATAAATTTCAGGAGAAGGTAATTCATCTGACTGATGTGACAAAGATTTATTTTGAGAATCTGTTGAGAGCTTTTGAGGATGGCCTAGATAAGGTGGAAGCAAGGAGGTCGATTAAGTAG 1503 0.4079 MDSIFDMKSLSHGLVCGLRERDKNLPNTEEEEEDKRENFTILSELEIKRLQEDAINKVASVLCIPDASACFLLCHNLWNVTKVLESWCEDEEKVQKAAGLLNQPKVEIDWLKDLCQVCFRSSEKGKILSAGCAHPLCEACWMDYIDTNINKGPSKCLTLRCPDPSCDVAVDRDMIRELASESSKVMYEQFLLWSYVDSKAKMRWCPAPGCDYVVCYQGDGGCARDLDVTCLCYHSFCWRCGEESHSPVDCETAGRWMKKIDKSTSENGKWILAHTKPCPRCKSLIEKNQGFKYMTCKCGFQFCWVCFHEQLKCESRSCSPFIRMHIMEFQGTDGEEVEINMEKDNPKKCNHYYECWARNDFLSKSILQKLIDLDRKYLSMSLQKRETYFDFVKKAWQQIAECRRILKWTNVYGYFLPKNEKAKKQFSEYIQVEAEVALEKLQQCAKVEETMFQDNYPEESLNKFQEKVIHLTDVTKIYFENLLRAFEDGLDKVEARRSIK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0435 500 SUPERFAMILY RING/U-box 187 256 - -
Lja3g0435 500 SMART ibrneu5 185 250 IPR002867 -
Lja3g0435 500 SMART ibrneu5 254 313 IPR002867 -
Lja3g0435 500 ProSiteProfiles TRIAD supradomain profile. 111 322 IPR044066 -
Lja3g0435 500 SUPERFAMILY RING/U-box 270 314 - -
Lja3g0435 500 Coils Coil 490 500 - -
Lja3g0435 500 SUPERFAMILY RING/U-box 114 194 - -
Lja3g0435 500 Gene3D - 246 493 - -
Lja3g0435 500 ProSiteProfiles Zinc finger CCHC-type profile. 237 250 IPR001878 GO:0003676|GO:0008270
Lja3g0435 500 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 491 IPR031127 GO:0004842|GO:0016567
Lja3g0435 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED 21 491 - -
Lja3g0435 500 Pfam IBR domain, a half RING-finger domain 186 250 IPR002867 -
Lja3g0435 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0435 Lja-Chr3 4442676 4444761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0435 35 496 ARIADNE family AT1G65430 43.552 8.81e-127 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0435 K11968 - gmx:100801350 439.499