Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0434 ATGTACATAGCTTATTTTGAGCGCGGTCTGATTAAACCCGGCTCATCTAGACCAGAGAAGCATAATTTATATTGGGATAAACCTATACCAACCCCGATTGTGCCCCAAATTACAATTAGTTTCAAGCGATTGAACCCTAAGTGTCAACCTCATCGCACTCGTTTCTCTGGTAGTGCTTTTCCGTGCTGCTCCTTCTACCCTTTGATTCTCTCCATGGATTCTGCATTCGACTCTTGTAGCGATGATGAAGTTTCTGACTTGGGAGACATCGAGCAGGAGGATGACGAGACAAGCGAACATGGTTTCACTCAGGAAGCTGGTAATCCTTTTAAGACCACATTCGTTAATAAACACTTTTCCATTTTAAGTGAATTTGATGTCAAGCGACTTCAAGAGGGTGACATTAATAAGGTTTCATCTGTTCTTTTTATACCAAATGCTTCTGCTTGCCTTTTGCTCTATCATAACCAATGGAGTGTGACTAGAGTGCTTGATACATGGTTTGAAGATAAAGAAAAAGTTCAAAAGGCTGTAGGATTGTTAAACCAACCCCAGGTAAGGTTTTGCCGGGCAAAATATTTGTGTCTGGTCTGTTTTCAATCCAGTGATAAGATTATGTCTGTAGGGTGTGGTCATCCAGTGTGTACCATTTGTTGGATGGACTATATAGAAGCATACATTAGCAAGGTGCCTTCTGAGTGTTTTACCCTTAGCTGCTCTATTCTGTTTTGCGATGCAGCTGTGGATGGAGACATGATTCATAGATATGCTAGTGCGTCAAGTAAAGCGAAGTATGATCAATTTTTATTCCGGTCTTATGTGGAAAATAAGAAGATGAAGTCGTGTCCTGCACCAGGTTGTGACTATGTTGTATGTTATGAAGGTGGTGGTTGTACTAAATTTTTTTATGTTACCTGCCTTTGTCATCACAGCTTTTGTTGGAGTTGTGGGGAAGAGCCTCATAGACCTGTGGATTGTGAAACTGTTGATCAATGGATGAAAAAGATCCAGTCTACATCGAAGATTACGGAGAATAGAGAATTGATTCTTTCTTCTACTAAACCATGTCCGCGGTGCAAGTGTCCTATTAAGAAAAACCCAGAGTGCAAGCACATGACATGCAATTGTGGTTTTCAATTTTGCTGGGCATGTCTTCGTGAATGGTCGAAATGTGACAACATAAGTTGCTTTAGTTTTTTTAGGAGCTATCTGAAGCAGCTTCTAGATATGGATGAGGAAGAAGTGAAAACAAATATGGAAAGAGATTATTCAAAGAGGTACACTCACTGCTATGAACGATGGGCTACAAATGATTTTTTAAGAAAAGGGGCTCTAGAGAAACTGGTTGACCTGAGTTCTGTCGATATAAAGAGTTTGAGCATGTCACGTCAAAAGCTCGAAACTCATTTTGACTTCATGAAAAATGCCTGGCAACAGATAGCTGAATGTAGAAGAATACTCAAATGGACTAGTGCATATAGATACTTTCTCCCTGAGAACGAAAATGTCAAGTTTTTTGAGTACACTCAAGTTGAAGCTGAGGTGGCTTTGGCAAAACTTCATCAATGTGCTGACGCAGAACTGACTATGTTTCTGGGTGATGATTATCCAGAAGAATCTCGTGACAAATTTCGTCTGAAGCTGATTGATCTGACTAATGTGACAAAGAATTATTTTGAGAATATGATGAAATCCTTAGAGGATGGCATAGATGATGTGCAAGCAACAAGGTCGACTGGGATACGCAATACCTCATATGAAAGAGGAAGTGGGAGTGCAATTAACATTGATGGACGGATATATACTCGTAGAGCTTATAAGGCAAGTGATACATTTGTGGTTCTGAACATTAATTGGTCAGTGGTTGCTCTTGGCATTAACAGCTCCCTAGTTAAAGTGCCTTTCACTCTCTTTGGAATTTGGATTATAGAATGCTTCTACACATCGCCTTTTCCTCCCTCTGCTGTTACCATTTCACAACTGCTGCTAATTACCTTAGAACTTTACCTTAGTCAACACCAAATATATGTGGAGTGTGGACTCTTCATTTGTGGCAACCAAGAGTTTTTAGTTGTCACCAGGGAGAGGATGGAGACATATCTCGGAAACTCAATGATTGAGATTTTGTCACACTAA 2136 0.4003 MYIAYFERGLIKPGSSRPEKHNLYWDKPIPTPIVPQITISFKRLNPKCQPHRTRFSGSAFPCCSFYPLILSMDSAFDSCSDDEVSDLGDIEQEDDETSEHGFTQEAGNPFKTTFVNKHFSILSEFDVKRLQEGDINKVSSVLFIPNASACLLLYHNQWSVTRVLDTWFEDKEKVQKAVGLLNQPQVRFCRAKYLCLVCFQSSDKIMSVGCGHPVCTICWMDYIEAYISKVPSECFTLSCSILFCDAAVDGDMIHRYASASSKAKYDQFLFRSYVENKKMKSCPAPGCDYVVCYEGGGCTKFFYVTCLCHHSFCWSCGEEPHRPVDCETVDQWMKKIQSTSKITENRELILSSTKPCPRCKCPIKKNPECKHMTCNCGFQFCWACLREWSKCDNISCFSFFRSYLKQLLDMDEEEVKTNMERDYSKRYTHCYERWATNDFLRKGALEKLVDLSSVDIKSLSMSRQKLETHFDFMKNAWQQIAECRRILKWTSAYRYFLPENENVKFFEYTQVEAEVALAKLHQCADAELTMFLGDDYPEESRDKFRLKLIDLTNVTKNYFENMMKSLEDGIDDVQATRSTGIRNTSYERGSGSAINIDGRIYTRRAYKASDTFVVLNINWSVVALGINSSLVKVPFTLFGIWIIECFYTSPFPPSAVTISQLLLITLELYLSQHQIYVECGLFICGNQEFLVVTRERMETYLGNSMIEILSH* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0434 711 Pfam IBR domain, a half RING-finger domain 344 396 IPR002867 -
Lja3g0434 711 Pfam IBR domain, a half RING-finger domain 264 326 IPR002867 -
Lja3g0434 711 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED 85 580 - -
Lja3g0434 711 SUPERFAMILY RING/U-box 342 394 - -
Lja3g0434 711 SUPERFAMILY RING/U-box 267 333 - -
Lja3g0434 711 SUPERFAMILY RING/U-box 193 275 - -
Lja3g0434 711 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 85 580 IPR031127 GO:0004842|GO:0016567
Lja3g0434 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 277 IPR013083 -
Lja3g0434 711 Gene3D - 322 573 - -
Lja3g0434 711 ProSiteProfiles TRIAD supradomain profile. 191 402 IPR044066 -
Lja3g0434 711 SMART ibrneu5 263 326 IPR002867 -
Lja3g0434 711 SMART ibrneu5 334 396 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0434 Lja-Chr3 4433344 4437752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0434 85 592 ARIADNE family AT1G65430 44.444 4.92e-132 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0434 K11968 - pvy:116145967 436.417