Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0424 ATGGCCGTCAAGAAATCAAACAAGCTTCCCCAAAATGCAGTCTTCAAGCAAATCCTCAAGAGATGCTCCAGCTTAGGAAAAAAACAGGGCTTTGTTGATGATTATGGTCTCCCTCTTGATGTCCCAAAAGGCCATTTTGCAGTTTACGTTGGTGAGAATCGAAGCAGGTACATTGTCCCCATCTCATTCTTGACTCACCCTGAGTTTCAGTCTCTCCTAAGACAAGCTGAAGAAGAATTTGGCTTTGATCACGACATGGGCCTCACCATTCCCTGTGAAGAAGTTGTTTTTCGGTCACTAACATCAATGATTGGATGA 318 0.4371 MAVKKSNKLPQNAVFKQILKRCSSLGKKQGFVDDYGLPLDVPKGHFAVYVGENRSRYIVPISFLTHPEFQSLLRQAEEEFGFDHDMGLTIPCEEVVFRSLTSMIG* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0424 105 Pfam Auxin responsive protein 36 104 IPR003676 GO:0009733
Lja3g0424 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 104 IPR003676 GO:0009733
Lja3g0424 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0424 Lja-Chr3 4344631 4345351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0424 38 104 Calmodulin-binding Proteins AT3G43120 55.224 5.78e-21 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0424 K14488 - pop:7477848 186.808