Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0419 ATGGGTTTTCGTTTACCAGGTATCAGAAAGGCATCATTTGCTGTAAACCAATCCTCTGCAAAAGCTGTGGACGTGCCAAAGGGCTATCTTGCAGTTTATGTTGGAGAGAAAATGAAGAGGTTTGTGATCCCCATATCATACTTGAGACAACCTTCATTCCAAGACTTGCTGATTCAAGCTGAGGAACAATTTGGATATGACCATCCAATGGGTGGTCTCACAATTCCTTGCGATGAAGACATGTTCTTAGATATCACTTCTCGCTTAAATAGGTGA 276 0.4167 MGFRLPGIRKASFAVNQSSAKAVDVPKGYLAVYVGEKMKRFVIPISYLRQPSFQDLLIQAEEQFGYDHPMGGLTIPCDEDMFLDITSRLNR* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0419 91 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 90 IPR003676 GO:0009733
Lja3g0419 91 Pfam Auxin responsive protein 16 88 IPR003676 GO:0009733
Lja3g0419 91 PANTHER AUXIN-INDUCED PROTEIN 6B 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0419 Lja-Chr3 4307399 4307674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0419 17 82 Calmodulin-binding Proteins AT3G43120 53.030 2.84e-19 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0419 K14488 - gmx:112998524 158.688