Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0417 ATGGGTTTTCGTTTACCAGGAATCAGAAAGGCATCATTATCTGTAAACCAAGCATCTTCAAAATCTGTTGATGTGCCAAAGGGCTATCTTGCAGTTTATGTTGGAGAGGAAATGAAGAGGTTTGTGATCCCCATATCATACTTGAGTCAAACTTCATTCCAAGAGTTGTTGAACCAAGCTGAGGAACAATTTGGGTATGACCATCCAATGGGTGGTCTAACAATTCCTTGCAGAGAAGAGATGTTCTTAGATATCACTTCTAGATTGAATAGGTGA 276 0.3949 MGFRLPGIRKASLSVNQASSKSVDVPKGYLAVYVGEEMKRFVIPISYLSQTSFQELLNQAEEQFGYDHPMGGLTIPCREEMFLDITSRLNR* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0417 91 Pfam Auxin responsive protein 15 88 IPR003676 GO:0009733
Lja3g0417 91 PANTHER SMALL AUXIN-UP RNA-RELATED 14 90 - -
Lja3g0417 91 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 14 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0417 Lja-Chr3 4282465 4282740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0417 17 82 Calmodulin-binding Proteins AT3G43120 56.061 7.75e-22 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0417 K14488 - gmx:112998524 155.992