Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0404 ATGACAGTTGAAAGGAGGTTTGTTTTGGTGGGGATTAAATTCGATAGCCGTAGCAGGCAGATCCTCAACTGGGCTCTTGTCAAAGTTGCTGAACCTGGGGATTGTGTTATTGCAGTCCATGTAGTTAAAAGTTCAGATTATGTTTCCAAAAACAAGAGCCTAATAGATGGCTATTTGGAAGTTTATGAAGGACTGTGTGGTCTGAAGAAGGTTGGTCTCACAGGTCAAATCTTCTCAGGTAGCTCCATTAGAAACATCCTTGTTAGAGAAGCAAAAAACCATGCTGCTATGGCTCTAGTGGTAGGGGGTGGAGCTACCACAGCTAAATATTGTGCCAAACAGCTTCCACTCACCACCAATGTTCTAGCCATCCAAGATTCCAGAATTGTCTTCAGGAGGTGCACCAATAAACAACTATCAGATAGTCCTATACAAGATCCAAGACCAAGCTTAACAAGCACAAAATTCCTTAGTGGCACTGTGATCCGGTCTGAATTTGACAACTCTGTGGAGAAGAATGAGATATCAACAAGCCAAAATTCCATAGAACCGAAACAAGAAGCGTTGGACAGAATACAAAGGTTAAAGCCAAGGTCATTATCTATGCATGCAGGTGATCCTGCTAAGAAGCAGCTTGGTTGGCCTCTTCTTCGCAGAGCTAATTCAGGAATCTCACAAACCTCTAATGCAAGGGACATTTCAGTAGTACAATGGGTAATGAGTTTACCAAATCGTTCACCACAAAAAAGTTCTGTCTGTTCTTCCATTGAGGAAAGCCCATCCGAAAGGGGTATCAGTGACATTGAGGATGAGAGCTCTAAAAATTCTTCACCTTCATCTGTTGAAGTTGAATTACCAAAGAACCTAGAGCGGATGTTAAATGTAAACTCACTCAATTGCAAGAGGTTCAGCCTTGAGGTTCTGAAGTCTTACACTGGCCAATTCTCTTCAGAAAACTTGATTGGGAAAGGAGGGAGCAATCGCGTGTACAAAGGAGTTCTTCCCGATGGAAAGCCAATTGCAGTTAAAGTATTGAGGACATCAAAAGAAGCCTTGAAAGATTTTTCCCTTGAGGTGGAAATAATATCCTCATTAAAGCACACAAGCATCACCCCTCTACTTGGGATTTGCATAGAGGACAATGCTTTGATATCTGTTTATGATTATTTCCCCAAAGGGAGCTTAGAGGAAAATTTACATGGAAACAACAAGGATGAATCCATCTTGTCATGGGAAGTGAGATTTAAAGTAGCTGTTAGGATAGCTGAAGCTCTTGATTATCTACACAGGGAAGCTTTAAAACCTGTTATTCATAGAGATGTTAAATCTTCAAATATTCTTCTTTCCCATGGGTTTGAACCACAGTTGTCTGATTTTGGACTTGCAATATGGGGACCATCAACTTCATCCTTTTTGACACAACAAGATGTAGTGGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGTCTATGCCTTTGGTGTGGTTCTACTTGAACTAATATCAGGTAGGGAACCTATCAGCTCGGAACCTTGCAAAGGACAGGAGAGCTTGGTTGCGTGGGCAAAGCCAATGATAGAAAGTGAGGATATTAAAGGCTTGTTGGACCCAGATTTGGAAGGGAAATTTGATGAGGCTCAAATGCAAAGAATGGTTCAAGCAGCATCTTTATGCATCACAAGAGCTGCTAGGCTTCGTCCTAAACTGAACCAGATACTGAAGATCCTAAAAGGGGATGAGAATGTTGAACATTTCTTCAACTCCCATGGGAATGATCTTGAGAATTCAGAAAATCAAGAAAACATTGATGATGAAGTGTATCCAAATTCAAGTGCAGAGTTACACCTGAGTCTTGCATTACTTGGTGCTGAAGATGATAGTACATCATGTAGCAGTACAGACCACAGCTATAGTGAATACTTGAAAGAACAATGGAGCAGGTCATTAAGTTTTAATTAG 1989 0.4087 MTVERRFVLVGIKFDSRSRQILNWALVKVAEPGDCVIAVHVVKSSDYVSKNKSLIDGYLEVYEGLCGLKKVGLTGQIFSGSSIRNILVREAKNHAAMALVVGGGATTAKYCAKQLPLTTNVLAIQDSRIVFRRCTNKQLSDSPIQDPRPSLTSTKFLSGTVIRSEFDNSVEKNEISTSQNSIEPKQEALDRIQRLKPRSLSMHAGDPAKKQLGWPLLRRANSGISQTSNARDISVVQWVMSLPNRSPQKSSVCSSIEESPSERGISDIEDESSKNSSPSSVEVELPKNLERMLNVNSLNCKRFSLEVLKSYTGQFSSENLIGKGGSNRVYKGVLPDGKPIAVKVLRTSKEALKDFSLEVEIISSLKHTSITPLLGICIEDNALISVYDYFPKGSLEENLHGNNKDESILSWEVRFKVAVRIAEALDYLHREALKPVIHRDVKSSNILLSHGFEPQLSDFGLAIWGPSTSSFLTQQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSEPCKGQESLVAWAKPMIESEDIKGLLDPDLEGKFDEAQMQRMVQAASLCITRAARLRPKLNQILKILKGDENVEHFFNSHGNDLENSENQENIDDEVYPNSSAELHLSLALLGAEDDSTSCSSTDHSYSEYLKEQWSRSLSFN* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0404 662 PANTHER OS01G0253100 PROTEIN 6 655 IPR045271 GO:0004714|GO:0006468
Lja3g0404 662 MobiDBLite consensus disorder prediction 245 283 - -
Lja3g0404 662 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 6 655 - -
Lja3g0404 662 SMART serkin_6 315 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0404 662 MobiDBLite consensus disorder prediction 245 261 - -
Lja3g0404 662 Gene3D Phosphorylase Kinase; domain 1 277 389 - -
Lja3g0404 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Lja3g0404 662 ProSiteProfiles Protein kinase domain profile. 315 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0404 662 CDD USP_Like 8 102 - -
Lja3g0404 662 SUPERFAMILY Protein kinase-like (PK-like) 296 586 IPR011009 -
Lja3g0404 662 Pfam Protein kinase domain 316 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0404 662 Gene3D Transferase(Phosphotransferase) domain 1 390 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0404 Lja-Chr3 4151688 4156053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0404 303 582 Trihelix Transcription Factor Family AT1G68690 43.860 1.82e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja3g0404 Pkinase 7.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0404 - - lja:Lj0g3v0266219.1 1127.08