Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0394 ATGGGAAGATCACCTTGTTGTGAAAAAGCACACATAAACAAAGGAGCATGGACCAAAGAAGAAGATGATAGACTCATTTCTTATATCAGAGCTCATGGTGAAGGTTGCTGGCGGTCTCTACCCAAAGCCGCAGGCCTCCTCCGGTGCGGCAAGAGCTGCCGTCTCCGGTGGATCAACTACCTCCGCCCGGACCTCAAACGTGGCAACTTCACAGAAGAAGAGGATGAGCTCATCATCAAACTTCACAGTCTCCTTGGCAACAAGTGGTCTCTGATAGCTGGAAGATTGCCAGGAAGAACAGACAATGAGATAAAGAATTACTGGAACACTCACATCAGGAGGAAGCTTTTGAACAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAATGAAGTTGCACATGCTTCTCAGAATCAAGAACCTGGTTCTTCTCCTGCTACTGCTTCTGCTTCTGCTTCTGCACCCACCACTATATCTTTTGCTTCCTCTGCTAAAACAAAGCAACATCAACAGCAACAAGAGACAAGCACTGGTAGTGGTGAACCAAGCATGGTGGTGAGAAGGTCCATGTCCATGGGAGTAGAACGTTGTCCTGATTTGAACCTTGAGTTAACTATTAGTCCTCCACGCCATCATGAGCCTGATGAAACAGGGGAGAGAAACATCTGTTTTGGATGCAGTTTGGGTTTGCAGAACAGTAAGGATTGCAGCTGTGGAATTGGTAGCACTAGCAGTGGGGACAACACCAATGCTTCTTCTTCTTCTGCTGCTTATGATTTCTTGGGCTTGAAACCTGGTGTTTGGGATTACACAAGCTTGGAAATGAAATAA 831 0.4669 MGRSPCCEKAHINKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEVAHASQNQEPGSSPATASASASAPTTISFASSAKTKQHQQQQETSTGSGEPSMVVRRSMSMGVERCPDLNLELTISPPRHHEPDETGERNICFGCSLGLQNSKDCSCGIGSTSSGDNTNASSSSAAYDFLGLKPGVWDYTSLEMK* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0394 276 Gene3D - 68 141 - -
Lja3g0394 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g0394 276 CDD SANT 69 112 IPR001005 -
Lja3g0394 276 CDD SANT 16 61 IPR001005 -
Lja3g0394 276 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 243 - -
Lja3g0394 276 SMART sant 66 114 IPR001005 -
Lja3g0394 276 SMART sant 13 63 IPR001005 -
Lja3g0394 276 MobiDBLite consensus disorder prediction 134 184 - -
Lja3g0394 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g0394 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g0394 276 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja3g0394 276 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja3g0394 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g0394 276 Gene3D - 14 66 - -
Lja3g0394 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 243 - -
Lja3g0394 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0394 Lja-Chr3 4049635 4051214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0394 1 276 MYB Transcription Factor Family AT4G38620 58.885 2.48e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g0394 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0394 K09422 - gmx:778030 382.489