LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0387	ATGCGTAGAGTGATCGGGTTTCTCGCTCAACCGCGATTCCTCCTTCTCTTCATTGTTCTCTCTATTTTCCTCATTTTCGCTTTCTCTGGTTCTAAAACGGCCGAGGAGATAATAGAAGAGGAGCCCGAAATTACACACAGAGTATTCTTGGATATTGATGTTGATAAACAGCGTTTAGGTAGGCTCGTGATTGGATTATATGGCCAAGTTGTGCCAAAAACTGTAGAAAATTTTAGAGCTTTGTGCACAGGGGAGAAAGGTGCGGGTGCAAATGGCATAAAACTTCATTACAAAGGAACGCCATTTCATCGGATAATATCTGGTTTCGTAATTCAGGGTGGGGATATTGTTCATCATGATGGCAAAGCATCTGAATCTATTTATGGTGGAACCTTTCCTGATGAGAATTTCAGGATTAAACATTCTCATGCTGGTGTTGTCTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCATTACCACAGTGAAGGCCAGTTGGTTGGATGGAGAACATGTTGTCTTTGGCAAGGTTGTTCAAGGCATGGATATTGTGTTTGCAATTGAAGGGGGAGCCGGAACCTACAGTGGAAAACCCAGAAAGAAAGTAGTGATTGCAGACTCCGGAGAAATACCCAAGAGCCGGTGGGATGAGGAAAGTTGA	672	0.4315	MRRVIGFLAQPRFLLLFIVLSIFLIFAFSGSKTAEEIIEEEPEITHRVFLDIDVDKQRLGRLVIGLYGQVVPKTVENFRALCTGEKGAGANGIKLHYKGTPFHRIISGFVIQGGDIVHHDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDIVFAIEGGAGTYSGKPRKKVVIADSGEIPKSRWDEES*	224

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0387	223	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	97	114	IPR020892	GO:0003755\|GO:0006457
	Lja3g0387	223	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	22	223	-	-
	Lja3g0387	223	SUPERFAMILY	Cyclophilin-like	43	214	IPR029000	-
	Lja3g0387	223	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	52	211	IPR002130	GO:0000413\|GO:0003755
	Lja3g0387	223	Gene3D	-	35	220	IPR029000	-
	Lja3g0387	223	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	49	213	IPR002130	GO:0000413\|GO:0003755
	Lja3g0387	223	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	22	223	-	-
	Lja3g0387	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	66	81	IPR002130	GO:0000413\|GO:0003755
	Lja3g0387	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	102	114	IPR002130	GO:0000413\|GO:0003755
	Lja3g0387	223	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	145	160	IPR002130	GO:0000413\|GO:0003755

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0387	Lja-Chr3	3978465	3982728	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g0387	60	211	U-box Gene Family	AT5G67530	43.137	1.99e-27	107

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0387	-		-	gmx:100800775	385.185

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