Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0380 ATGAGCGATTCAAGGGTGAATGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGATTCATCACCCCTGACGATGGCGGTGACGATCTCTTCGTTCACCAATCGGAGATCAAATCCGAGGGTTTCCGATGCCTCGGTGAAGGAGAGGACGTCGAGTTCATCGTTGCTTCCGATCCCGATGGCCGCGCCAAGGCTATTGAGGTGACTGGCCCTAACGGCCAAGCTGTGCAAGGAACTCGCCGCGGAGGCGGTGCTGGTGGCGGTGGACGCGGAGGAGGCGGTTATGGTGGAGGCGGATATGGCGGAGGCGGTTACGGTGGGGGAGGACGCGGAGGTGGCGGATATGGAGGAGGAGGCGGATACGGTGGAAGCGGTGGTTATGGTGGTGGCGGTGGATACGGTGGCGGTGGACGAGGAGGTGGTCGCGGAGGCGGCGGTGGTGGTGCTTGCTACAACTGTGGCGAGGAGGGACATCTGGCTAGGGACTGCGGCAGCGGAGGAGGCGGCGGTGGAGGCAGGTACGGAGGCGGTGGCGGCGGAGGCGGTGGTGGCGGTGGAAGCTGCTACAGCTGCGGTGAATCTGGACATTTCGCAAGGGACTGTCCTTCCAGCACCCGTTGA 624 0.6282 MSDSRVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDPDGRAKAIEVTGPNGQAVQGTRRGGGAGGGGRGGGGYGGGGYGGGGYGGGGRGGGGYGGGGGYGGSGGYGGGGGYGGGGRGGGRGGGGGGACYNCGEEGHLARDCGSGGGGGGGRYGGGGGGGGGGGGSCYSCGESGHFARDCPSSTR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0380 207 SMART c2hcfinal6 150 166 IPR001878 GO:0003676|GO:0008270
Lja3g0380 207 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Lja3g0380 207 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lja3g0380 207 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 206 - -
Lja3g0380 207 Pfam Zinc knuckle 188 204 IPR001878 GO:0003676|GO:0008270
Lja3g0380 207 Pfam Zinc knuckle 150 164 IPR001878 GO:0003676|GO:0008270
Lja3g0380 207 SUPERFAMILY Retrovirus zinc finger-like domains 141 205 IPR036875 GO:0003676|GO:0008270
Lja3g0380 207 Gene3D - 184 207 - -
Lja3g0380 207 Gene3D - 142 173 - -
Lja3g0380 207 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Lja3g0380 207 Gene3D - 1 83 IPR012340 -
Lja3g0380 207 PANTHER COLD SHOCK PROTEIN 2 1 206 - -
Lja3g0380 207 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lja3g0380 207 ProSiteProfiles Zinc finger CCHC-type profile. 189 204 IPR001878 GO:0003676|GO:0008270
Lja3g0380 207 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Lja3g0380 207 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lja3g0380 207 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lja3g0380 207 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lja3g0380 207 SMART csp_8 7 72 IPR011129 GO:0003676
Lja3g0380 207 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lja3g0380 207 ProSiteProfiles Zinc finger CCHC-type profile. 151 164 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0380 Lja-Chr3 3867033 3868090 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lja3g0380 CSD 5.6e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0380 - - zju:107427522 155.221